Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,400,448 – 12,400,546 |
Length | 98 |
Max. P | 0.711007 |
Location | 12,400,448 – 12,400,546 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 85.24 |
Mean single sequence MFE | -34.47 |
Consensus MFE | -25.48 |
Energy contribution | -27.38 |
Covariance contribution | 1.91 |
Combinations/Pair | 1.21 |
Mean z-score | -2.71 |
Structure conservation index | 0.74 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.711007 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12400448 98 + 20766785 AAGUGGAAGUUGGUGUGGCCAGCCGGAAGGGCAAAUGGGGCACGACGUGGUUCGUUCGGGAACAUGAAGCUUCAUAUGGCCGGCUGCAUUAAUAAUGA ........(((((((..(((...(....)(((..(((((((....((((.(((......)))))))..)))))))...))))))..)))))))..... ( -34.50) >DroSec_CAF1 17108 98 + 1 AAGUGGAAGUUGGUGUGGCCAGCCGGAAGGGCAAAUGGGGCACGACGUGGUUCGUUCGGGAACAUGAAGCUUCAUAUGGCCGGCUGCAUUAAUAAUGA ........(((((((..(((...(....)(((..(((((((....((((.(((......)))))))..)))))))...))))))..)))))))..... ( -34.50) >DroSim_CAF1 17568 98 + 1 AAGUGGAAGUUGGUGUGGCCAGCCGGAAGGGCAAAUGGGGCACAACGUGGUUCGUUCGGGAACAUGAAGCUUCAUAUGGCCGGCUGCAUUAAUAAUGA ........(((((((..(((...(....)(((..(((((((....((((.(((......)))))))..)))))))...))))))..)))))))..... ( -34.50) >DroEre_CAF1 21915 98 + 1 AAGUGGAAGUUGGUGUGGCCAGCCGGAAGGGUAAAUGGGGCUCCACUUGGUUCGUUCGGGAAAAUGCAGCCCCAUAUGGCCGGCUGCAUUAAUAAUGA ........(((((((..(((...(....)(((..((((((((.(((((((.....)))))....)).))))))))...))))))..)))))))..... ( -38.90) >DroYak_CAF1 18383 98 + 1 AAGUGGAAGUUGGUGUGGCCAGCCGGAAGGGCAAAUGGGGCUCGACUUGGUUCGUUCGGGACAACGUAGACCCAUAUGGCCGGCUGCAUUAAUAAUGA ........(((((((..(((.((((...(((...(((..(((((((.......).))))).)..)))...)))...)))).)))..)))))))..... ( -35.20) >DroPer_CAF1 13245 83 + 1 -----GAAGUUGGUGUGGCCAGCCGGAAGAGGAAGGUGGGACCAGUGUGGC-CAUUC----AUAUGCA----CAUAU-GCGGGCUGCAUUAUUAAUGA -----......(((.(.(((..((......))..))).).)))((((..((-(...(----((((...----.))))-)..)))..))))........ ( -29.20) >consensus AAGUGGAAGUUGGUGUGGCCAGCCGGAAGGGCAAAUGGGGCACGACGUGGUUCGUUCGGGAACAUGAAGCUUCAUAUGGCCGGCUGCAUUAAUAAUGA ........(((((((..(((...(....)(((..(((((((....((((.(((.....))).))))..)))))))...))))))..)))))))..... (-25.48 = -27.38 + 1.91)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:30 2006