Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,392,030 – 12,392,135 |
Length | 105 |
Max. P | 0.691487 |
Location | 12,392,030 – 12,392,135 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 81.68 |
Mean single sequence MFE | -41.22 |
Consensus MFE | -28.13 |
Energy contribution | -30.22 |
Covariance contribution | 2.09 |
Combinations/Pair | 1.25 |
Mean z-score | -1.75 |
Structure conservation index | 0.68 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.691487 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12392030 105 - 20766785 GUGCCAAGAAAACCGCUUCACACGCUCACCAAUAGCUCAUCCACGCCCAUUUCCGGUUCAUCGUCGAGCGGAAGUGGGGGAGGAGGAGUGGGCAACGGCAACGGU .((((.......(((((((....(((.......)))...(((.(.((((((((((.(((......))))))))))))).).)))))))))).....))))..... ( -42.30) >DroSec_CAF1 8945 102 - 1 GUGCCAAGAAAACCGCUUCACACGCUCACCAAUAGCUCCUCCACGCCCAUCUCCGGUUCAUCGUCGAGCGGAAGUGGGGGAGGAGGAGUGGGC---GGCAACGGU .((((..(((......)))....((((.......((((((((.(.((((..((((.(((......)))))))..)))).).))))))))))))---))))..... ( -44.71) >DroSim_CAF1 9202 102 - 1 GUGCCAAGAAAACCGCUCCACACGCUCACCAAUAGCUCCUCCACACCAAUCUCCGGUUCAUCGUCGAGUGGAAGUGGGGGAGGUGGAGUGGGC---GGCAACGGU ..(((.......(((((((((..(((.......)))((((((((.(((.((..(((....)))..)).)))..)))))))).)))))))))..---(....)))) ( -43.00) >DroEre_CAF1 13546 102 - 1 GUGCCCAGGAAACCGCUUCACACGCUCACCAACAGCUCCUCCACGCCCAUCUCCGGUUCAUCCUCGAGCGGAAGUGGGGGAGGACGAGUGGUC---GGAAACGGA ....((.....(((((((.....(((.......)))((((((...((((..((((.(((......)))))))..)))))))))).))))))).---(....))). ( -37.90) >DroYak_CAF1 9887 102 - 1 GUGCCAAGGAAACCGCUGCACACGCUCACCAACAGCUCCUCCACGCCCAUCUCCGGCUCAUCGUCGAGCGGAAGUGGCGGAGGAGGUGUGGGC---GGAAACGGA ((((...(....)....)))).(((((((....(.(((((((..(((.(..((((.(((......)))))))..))))))))))).)))))))---)........ ( -44.80) >DroPer_CAF1 5100 99 - 1 GUGCCCCGCAAGCCCCUCCACACGCUGAGCAACUGC---CUCACAUCCACAUCCGCAUCUUCUUCGAGUGGCAGUGGCAGUAGUGGGGGUAGC---GGUAGCAGC .(((.((((.....(((((((..((((.((....))---.......((((..((((.((......))))))..)))))))).)))))))..))---))..))).. ( -34.60) >consensus GUGCCAAGAAAACCGCUUCACACGCUCACCAACAGCUCCUCCACGCCCAUCUCCGGUUCAUCGUCGAGCGGAAGUGGGGGAGGAGGAGUGGGC___GGCAACGGU .((((.......(((((((....(((.......)))((((((...(((((.((((.(((......))))))).)))))))))))))))))).....))))..... (-28.13 = -30.22 + 2.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:29 2006