Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,390,305 – 12,390,407 |
Length | 102 |
Max. P | 0.577646 |
Location | 12,390,305 – 12,390,407 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 92.17 |
Mean single sequence MFE | -19.64 |
Consensus MFE | -16.44 |
Energy contribution | -16.24 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.11 |
Mean z-score | -1.30 |
Structure conservation index | 0.84 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.577646 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12390305 102 - 20766785 UUUAAAUCACCUUCAUUGUACUUGUGUCUGCAUAUUUACUUCUUUUGUGGGCGUUUUUGGCAUUUAAUGCUUUUAAUUCAAAAGAA--AAACUAUGCCAAACAU ......((((.......(((..((((....))))..))).......)))).....((((((((......(((((.....)))))..--.....))))))))... ( -18.76) >DroSec_CAF1 7190 100 - 1 UUUAAAUCACUUUCAUUGUACUUGUGUCUGCAUAUUUACUU-UUCUGUGGGCGUUUUUGGCAUUUAAUGCU-UUAGUUCAGAAGAA--AAACUAUGCCAAACAU ......((((.......(((..((((....))))..)))..-....)))).....((((((((......((-((......))))..--.....))))))))... ( -18.94) >DroSim_CAF1 7473 101 - 1 UUGAAAUCACCUUCAUUGUACUUGUGUCUGCAUAUUUACUU-UUCUGUGGGCGUUUUUGGCAUUUAAUGCUUUUAGUUCAGAAGAA--AAACUAUGCCAAACAU ......((((.......(((..((((....))))..)))..-....)))).....((((((((......(((((.....)))))..--.....))))))))... ( -18.44) >DroEre_CAF1 11801 101 - 1 UUAAAAACACGUUUAUUGUACUUGUGUCUGCAUAUUUACUU-UUGUGUGGGCGUUUUUGGCAUUUAAUGCUUUUAGUUCAGAAGAA--AAACUAUGCCAAACAU ..(((((((((.....)))......(((..((((.......-.))))..)))))))))(((((......(((((.....)))))..--.....)))))...... ( -22.32) >DroYak_CAF1 8115 103 - 1 UUUAAUUCACCUUCAUUGUAUUUACGUCUGCAUAUUUACUU-GAUUGUGGGCGUUUUUGGCAUUUAAUGCUUUUAGUUCAAAAGAAACAAACUAUGCCAAACAU .......................(((((..((.(((.....-)))))..))))).((((((((......(((((.....))))).........))))))))... ( -19.76) >consensus UUUAAAUCACCUUCAUUGUACUUGUGUCUGCAUAUUUACUU_UUCUGUGGGCGUUUUUGGCAUUUAAUGCUUUUAGUUCAGAAGAA__AAACUAUGCCAAACAU ........................((((..((.............))..))))..((((((((......(((((.....))))).........))))))))... (-16.44 = -16.24 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:28 2006