| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,387,271 – 12,387,383 |
| Length | 112 |
| Max. P | 0.683313 |
| Location | 12,387,271 – 12,387,383 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 81.06 |
| Mean single sequence MFE | -34.83 |
| Consensus MFE | -21.99 |
| Energy contribution | -22.47 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.683313 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12387271 112 + 20766785 AUGUACAAUAAAUUGCGUAAACAGGUCAUGUGCUGGAUAAGCCGGUAACGGAGCUGUGUCUCACCUGCAUUUGUGAGGCCAUUAGUGGUUGCAAUGCCACGGCGAUUUGCAC ........((((((((....((((.((...((((((.....))))))...)).))))(((((((........))))))).....(((((......))))).))))))))... ( -39.00) >DroVir_CAF1 8951 110 + 1 A-AUCAAAACAUAUGC-UUAUUAGGGCACUUGCUGGACAAGCCCGUGACGGAGCUGUGCCUCAACUGCAUUUGCGAGGCAAUGUCCGGCUGCAAUGCGACUGCUAUAUGCAC .-.......(((((((-....((..(((...((((((((((((((...))).))).((((((....((....)))))))).)))))))))))..)).....)).)))))... ( -36.50) >DroSim_CAF1 4456 111 + 1 A-GUUAAAAAAAUUGUGUAAACAGGUCAUGUGCUGGAUAAACCCGUAACGGAGCUGUGUCUCACCUGCAUUUGUGAGGCCAUCAGUGGCUGCAAUGCCACAGCGAUUUGCAC .-............((((((((((.((...(((.((.....)).)))...)).))))(((((((........))))))).....(((((......)))))......)))))) ( -34.20) >DroEre_CAF1 4307 112 + 1 AUAUUUAAAAAUUUGCAUAAAUAGGUCAUGUGCUGGAUAAACCCGUAACGGAGCUGUGUCUCACCUGCAUUUGUGAGGCCAUCAGUGGCUGUAAUGCCACGGCGAUUUGCAC ............((((....((((.((...(((.((.....)).)))...)).))))(((((((........))))))).....(((((......))))).))))....... ( -31.20) >DroYak_CAF1 5092 112 + 1 AUAUCUAAGGAAUUGCAUAAACAGGUCAUGUGUUGGAUAAGCCCGUAACGGAGCUGUGCCUCACCUGCAUUUGUGAGGCCAUCAGUGGCUGUAAUGCCACGGCGAUUUGCAC .........(((((((....((((.((.(((..(((......)))..))))).))))(((((((........))))))).....(((((......))))).))))))).... ( -38.30) >DroAna_CAF1 4966 108 + 1 ACAUUUA----UUUUAUUCAUUAGGUCACGUCUUGGAUAAACCCGUAACGGAGUUGUGUUUGAAUUGUAUUUGUGAGGCCAUUAGUGGCUGCAAUGCUACGGCUAUUUGCAC (((..((----(...(((((.(((.((.(((..(((......)))..))))).)))....))))).)))..)))..(((((....)))))((((.((....))...)))).. ( -29.80) >consensus AUAUUUAAAAAAUUGCAUAAACAGGUCAUGUGCUGGAUAAACCCGUAACGGAGCUGUGUCUCACCUGCAUUUGUGAGGCCAUCAGUGGCUGCAAUGCCACGGCGAUUUGCAC ....................((((.((...(((.((.....)).)))...)).))))(((((((........))))))).....(((((......))))).((.....)).. (-21.99 = -22.47 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:27 2006