Locus 3751

Sequence ID 2R_DroMel_CAF1
Location 12,375,527 – 12,375,625
Length 98
Max. P 0.558880
window6088

overview

Window 8

Location 12,375,527 – 12,375,625
Length 98
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 84.35
Mean single sequence MFE -17.22
Consensus MFE -12.67
Energy contribution -12.03
Covariance contribution -0.64
Combinations/Pair 1.25
Mean z-score -1.91
Structure conservation index 0.74
SVM decision value 0.05
SVM RNA-class probability 0.558880
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12375527 98 + 20766785
UUUCUCGGCUUAUU---------AACUAGAGACAAGCUCACAACAAAUUGUGAGUAAAAAAUAAACAAACAGAAGAUUGAAUGUGGAAUGAGGAAGGGAAUAAAGUU
.(((((..((((((---------.((.........((((((((....))))))))..........(((.(....).)))...))..))))))...)))))....... ( -18.00)
>DroSec_CAF1 34463 96 + 1
UUUCUCGGCUUAUU---------AACUAGAGACAAGCUCACAGCAAAUUGUGAGUAA--AAUAAACAAACAGAAGAUCGAAUGUGGAAUGAGGAGAGGAAUAAAGUU
((((((..((((((---------.((....(((..((((((((....))))))))..--......(.....)..).))....))..))))))..))))))....... ( -19.10)
>DroSim_CAF1 34886 96 + 1
UUUCUCGGCUUAUU---------AACUAGAGACAAGCUCACAGCAAAUUGUGAGUAA--AAUAAACAAACAGAAGAUUGAAUGUGGAAUGAGGAGAGGAAUAAAGUU
((((((..((((((---------.((.........((((((((....))))))))..--......(((.(....).)))...))..))))))..))))))....... ( -20.00)
>DroEre_CAF1 34289 94 + 1
UUUCUCGGCUAAUU---------AACUAGAGACAAGCUCACAACAAAUUGUGAGUAA--AAUAAAAAAAC--AAGAUUGAAAAUGGAAUGAGGAAAAGAAUAAAGUU
(((((((.(((...---------...)))......((((((((....))))))))..--...........--................)))))))............ ( -15.00)
>DroYak_CAF1 35285 96 + 1
UUUCUCGGCUUAUU---------AACUAGAGACAAGCUCACAACAAAUUGUGAGUAA--AAUAAACAAACAGAAGAUUGAAUAUGACAUGAGGAAAAGAAUAAAGUU
(((((((.(.((((---------............((((((((....))))))))..--......(((.(....).))))))).)...)))))))............ ( -15.60)
>DroAna_CAF1 9620 98 + 1
UUUCUCGGCAAAAUAUAAAACGCAACUAGAGACACGCUCACAUCCAAGUGUGAGUUA--AAUC----AACAGAAGAUUGAAAAUUGAAUGAAAAAAUG---AGAGUU
.((((((((............)).....((.....((((((((....))))))))..--..))----.............................))---)))).. ( -15.60)
>consensus
UUUCUCGGCUUAUU_________AACUAGAGACAAGCUCACAACAAAUUGUGAGUAA__AAUAAACAAACAGAAGAUUGAAUAUGGAAUGAGGAAAGGAAUAAAGUU
(((((((..................(....)....((((((((....)))))))).................................)))))))............ (-12.67 = -12.03 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:24 2006