Locus 3750

Sequence ID 2R_DroMel_CAF1
Location 12,374,360 – 12,374,456
Length 96
Max. P 0.592814
window6087

overview

Window 7

Location 12,374,360 – 12,374,456
Length 96
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 76.96
Mean single sequence MFE -26.53
Consensus MFE -14.07
Energy contribution -14.02
Covariance contribution -0.05
Combinations/Pair 1.29
Mean z-score -1.73
Structure conservation index 0.53
SVM decision value 0.12
SVM RNA-class probability 0.592814
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12374360 96 - 20766785
G-----CGA--------U---------UACUGGCUACCAACCGUUGGGAAUGCCUGUUUGCCCUUUUUGGUUAGUGGCUCAUCCUCGUCGGAUUCAUCUUUGUCAUCGACAUCAUCAU
.-----.((--------(---------....((((((.(((((..(((...(....)...)))....))))).)))))).......(((((...((....))...))))))))..... ( -23.50)
>DroPse_CAF1 57765 118 - 1
UAAGAUCGAACUAGCAAUAGCCAGAGCUCGCGGCUACUCACCGUUGGGAAUGCCAUUUUGCCCUUUUUGGUUAGUGGCUCAUCCUCGUCAGACUCAUCUUUGUCAUCGACAUCAUCAU
...(((.((........(((((.(....)..)))))......(((((((..((((((..(((......))).))))))...)))......(((........)))..)))).))))).. ( -28.90)
>DroEre_CAF1 33149 96 - 1
U-----CGA--------U---------GAGGUGCUACCAACCGUUGGGAAUGCCUGUUUGCCCUUUUUGGUUAGUGGCUCAUCCUCGUCGGAUUCAUCUUUGUCAUCCACAUCAUCAU
.-----.((--------(---------((((.(((((.(((((..(((...(....)...)))....))))).)))))....)))))))((((.((....))..)))).......... ( -31.70)
>DroWil_CAF1 93584 89 - 1
U-----CGA--------U----------------UCUUUACCGUUGGGAAAGCCACUUUACUCUUUUUGGUUAGUGGCUCAUCCUCGUCGGAUUCAUCCUUGUCAUCAAUAUCAUCAU
.-----...--------.----------------......(((.(((((.(((((((..(((......))).)))))))..))).)).)))........................... ( -20.60)
>DroAna_CAF1 8415 94 - 1
U-----AGA--------U---------UAU--AAUUCUCACCGUGGGGAAUGCCAGUUUGCCCUUUUUGGUUAGUGGCUCGUCCUCAUCGGAUUCAUCUUUGUCAUCGACAUCAUCAU
.-----.((--------(---------...--........(((((((((..((((.(..(((......))).).))))...)))))).))).........((((...))))..))).. ( -25.60)
>DroPer_CAF1 57886 118 - 1
UAAGAUCGAACUAGCAAUAGCCAGAGCUCGCGGCUACUCACCGUUGGGAAUGCCAUUUUGCCCUUUUUGGUUAGUGGCUCAUCCUCGUCAGACUCAUCUUUGUCAUCGACAUCAUCAU
...(((.((........(((((.(....)..)))))......(((((((..((((((..(((......))).))))))...)))......(((........)))..)))).))))).. ( -28.90)
>consensus
U_____CGA________U_________UAG_GGCUACUCACCGUUGGGAAUGCCAGUUUGCCCUUUUUGGUUAGUGGCUCAUCCUCGUCGGAUUCAUCUUUGUCAUCGACAUCAUCAU
..........................................(((((((..((((....(((......)))...))))...)))......(((........)))..))))........ (-14.07 = -14.02 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:23 2006