| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,372,272 – 12,372,375 |
| Length | 103 |
| Max. P | 0.977258 |
| Location | 12,372,272 – 12,372,375 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 73.72 |
| Mean single sequence MFE | -24.26 |
| Consensus MFE | -16.07 |
| Energy contribution | -15.29 |
| Covariance contribution | -0.78 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.66 |
| SVM decision value | 1.79 |
| SVM RNA-class probability | 0.977258 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12372272 103 + 20766785 UCCUUCCUUCCUUGGCUUUUGUUCAUGCUAAAUCCUU-UAAAUG-GGUU-CUGCGUAGUUUAAUGCCGAGGUACAGCAAAA----C---UUCAAUAUUCAUGUUCCCUUGCGC .........(((((((..(((..(((((..(((((..-.....)-))))-..)))).)..))).)))))))....((((((----(---............)))...)))).. ( -24.90) >DroVir_CAF1 43508 103 + 1 AUAGAAUAUCCUUGGCUAUUGUUCAUGCUAAACCCUGACCAAUAUGGUU-UCGUGUAGU-AAAAGCUAAGGUAGAUUAAAA----C---UUCA-AUUUCAUGGUUCUUUGCGC ..(((((..((((((((.(((((((((..(((((...........))))-))))).)))-)).))))))))..((......----.---.)).-........)))))...... ( -19.20) >DroPse_CAF1 55608 106 + 1 UUCGUUUUUCCUUGGCUAUUGUUCAUGCUAAUCCUUU-CCAAUGGGGUU-UUGCGUAGU-AAAGGCCGAGGUAUAGCAACA----UUUUUUCAGUAUUCAUAGUUCCUUGCGC ...(((...((((((((.(((((.((((.((((((..-.....))))))-..)))))))-)).))))))))...)))....----............................ ( -26.00) >DroGri_CAF1 11874 102 + 1 ------UAUCCUUAGCUAUUGUUCAUGCGAAACCUUGAACAAUAUGGUU-UUGCAUAGU-AAAUGCUAAGGUAGAAUAAAAACUAC---UUCAAUUUUCAUAGUUCCUUGCGC ------...(((((((.(((....((((((((((...........))))-))))))...-.))))))))))...............---........................ ( -23.50) >DroAna_CAF1 6376 96 + 1 ----UAC--CCUUGGCUAUUGUUCAUGCUGAACCCUU-CCAGUG-GGUUUUUGCAUAGU-AAAUGCCAAGGAACAUCAAAC----C---UUCAAUUCUCAUGUUCC-UUUCGC ----...--..(((((.(((....((((.((((((..-.....)-)))))..))))...-.))))))))(((((((.....----.---..........)))))))-...... ( -25.99) >DroPer_CAF1 55655 104 + 1 UUCGUUUUUCCUUGGCUAUUGUUCAUGCUAAUCCUUA-CCAAUGGGGUU-UUGCGUAGU-AAAGGCCGAGGUAUAGCAACA----UU--UUCAGUAUUCAUAGUUCCUUGCGC ...(((...((((((((.(((((.((((.((((((..-.....))))))-..)))))))-)).))))))))...)))....----..--........................ ( -26.00) >consensus UUCGUAUUUCCUUGGCUAUUGUUCAUGCUAAACCCUU_CCAAUG_GGUU_UUGCGUAGU_AAAUGCCAAGGUACAGCAAAA____C___UUCAAUAUUCAUAGUUCCUUGCGC .........(((((((........((((..((((...........))))...))))........))))))).......................................... (-16.07 = -15.29 + -0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:22 2006