Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,368,733 – 12,368,824 |
Length | 91 |
Max. P | 0.740664 |
Location | 12,368,733 – 12,368,824 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 72.07 |
Mean single sequence MFE | -25.22 |
Consensus MFE | -19.75 |
Energy contribution | -19.52 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.07 |
Mean z-score | -0.65 |
Structure conservation index | 0.78 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.740664 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12368733 91 + 20766785 UGCCAUGGUGCGGAAAUCGAGAUUUCUGCGUGCCCUGGCCAAGCAGUAUUUGCUGUAGUCGCAGCCCC-----CA-----CAGUCC----AAACUCUAAUUCAAA .((((.(((((((((((....))))))))..))).))))......((....(((((....)))))...-----.)-----).....----............... ( -24.70) >DroPse_CAF1 52593 81 + 1 CGCCAUGGUGCGCAAGUCUCGCUUCAUUCGCGCCCUGGCCAAGCAGUAUUUGCUGUAGUCGCAGACGCAGA--CG-----CAGGUU----AA------------- .((((.((((((.(((.....)))....)))))).))))...(((((....))))).(((((....)).))--).-----......----..------------- ( -26.40) >DroGri_CAF1 8698 84 + 1 CGCCAUGGUGCGAAAGUCGCGCUUCCUGCGCGCCCUGGCCAAGCAGUAUUUGCUGUAGUCGCAG-------CCCAU-CCUCCCCUG----AAACUA--------- .((((.(((((....)).((((.....))))))).))))...(((((....)))))(((..(((-------.....-......)))----..))).--------- ( -27.30) >DroYak_CAF1 28498 91 + 1 CGCCAUGGUGCGAAAAUCACGGUUUCUGCGUGCCCUGGCCAAGCAGUAUUUGCUGUAGUCGCAGCCCC-----CA-----CAGUCC----AAACUCUAAUUCAAA .((((.((..((.((((....))))...))..)).))))......((....(((((....)))))...-----.)-----).....----............... ( -22.30) >DroAna_CAF1 3309 100 + 1 CGCCAUGGUGCGAAAAUCAAGAUUCUUGCGCGCCUUGGCCAAGCAGUAUUUGCUGUAGUCGCAGCCCC-----CCUCCCCCAUUACACAGAAACUCCAAUGCAAG .((((.((((((.....((((...)))))))))).))))...(((......(((((....)))))...-----................(......)..)))... ( -24.20) >DroPer_CAF1 52635 81 + 1 CGCCAUGGUGCGCAAGUCUCGCUUCAUUCGCGCCCUGGCCAAGCAGUAUUUGCUGUAGUCGCAGACGCAGA--CG-----CAGGUU----AA------------- .((((.((((((.(((.....)))....)))))).))))...(((((....))))).(((((....)).))--).-----......----..------------- ( -26.40) >consensus CGCCAUGGUGCGAAAAUCACGCUUCCUGCGCGCCCUGGCCAAGCAGUAUUUGCUGUAGUCGCAGCCCC_____CA_____CAGUUC____AAACUC_________ .((((.((((((................)))))).))))...(((((....)))))................................................. (-19.75 = -19.52 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:21 2006