Locus 3747

Sequence ID 2R_DroMel_CAF1
Location 12,367,552 – 12,367,672
Length 120
Max. P 0.589453
window6084

overview

Window 4

Location 12,367,552 – 12,367,672
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.78
Mean single sequence MFE -42.50
Consensus MFE -26.05
Energy contribution -26.05
Covariance contribution 0.00
Combinations/Pair 1.36
Mean z-score -1.69
Structure conservation index 0.61
SVM decision value 0.11
SVM RNA-class probability 0.589453
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12367552 120 - 20766785
UCCUGCCUGCAGGGCUCCCAAACAUUGCUUGCAUCUUCCUCCCAAGGAUUGCAGAUCGAGUGGCUUCUGGUGCCACUCCUCCAGGCACUGUGUUAUCUGAAUGUGCAGGAUUUCCCAGGU
.((((((((((((....)).(((((((((((((...((((....)))).))).....(((((((.......)))))))....)))))..))))).........))))))......)))). ( -42.20)
>DroVir_CAF1 39381 120 - 1
ACCCGCCUGCAAAGCGCCCAAGCAUUGUUUGCAACGCGUGCCAAGCGCUUGCAGGUCGAGUGGCUUCUGAUGCCAUUCAUCCAAGCACUGAGUGAUCUGUAUAUGCAGUAUUUCCCAAGU
....((((((((.((((.((.((.(((....))).)).))....)))))))))))).(((((((.......)))))))........(((....(((((((....)))).))).....))) ( -38.90)
>DroPse_CAF1 51410 120 - 1
ACCCGCCUGGAGUACACUUAGACACUGCUUGCAUCGCGUUCCCAGCGACUGCAGGUCGAGCGGUUUCUGGUGCCACUCCUCCAGGCUCUGCGUUAUCUGGAUGUUCAGAAUCUCCCACGU
....((((((((..((((.(((.((((((((((((((.......)))).)))).....)))))).)))))))......)))))))).........(((((....)))))........... ( -41.30)
>DroGri_CAF1 7492 120 - 1
ACCCGCCUGCAAUGCGCCCAAACACUGCUUGCAACGUGUGCCCAGAGCCUGCAGAUCGAGCGGCUUCUGGUGCCAUUCGUCCAGGCUUUGUGUGAUCUGUAUAUGCAGGAUUUCCCAUGU
.....(((((((((((.....((((.(((((..(((.((((((((((((.((.......))))).))))).).))).))).)))))...))))....))))).))))))........... ( -43.20)
>DroEre_CAF1 26574 120 - 1
UCCCGCCUGCAGGGCUCCCAGGCAUUGCUUGCAUCUUGCUCCCAGUGAUUGCAGAUCUAGUGGCUUCUGGUGCCACUCCUCCAGGCACUGUGUUAUCUGGAUGUGCAGGAUUUCCCAGGU
....(((((..(((.(((....(((((...((.....))...)))))..((((.((((((((((...(((((((.........))))))).)))).)))))).)))))))..)))))))) ( -40.80)
>DroMoj_CAF1 38229 120 - 1
GCCCGCCUGCAAUGCGCCCAGACACUGCUUGCAGCGCGUGCCCAGCGCUUGCAAGUCGAGUGGCUUCUGAUGCCAUUCGUCCAGGCACUGCGUAAUUUGUAUGUGCAGGAUCUCCCACGU
.....(((((.....(((..(((...(((((((((((.......)))).))))))).(((((((.......))))))))))..)))...(((((.....))))))))))........... ( -48.60)
>consensus
ACCCGCCUGCAAUGCGCCCAAACACUGCUUGCAUCGCGUGCCCAGCGAUUGCAGAUCGAGUGGCUUCUGGUGCCACUCCUCCAGGCACUGUGUUAUCUGUAUGUGCAGGAUUUCCCACGU
....(((((...................(((((((((.......)))).)))))...(((((((.......)))))))...))))).........((((......))))........... (-26.05 = -26.05 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:20 2006