Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,365,574 – 12,365,691 |
Length | 117 |
Max. P | 0.663511 |
Location | 12,365,574 – 12,365,691 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.48 |
Mean single sequence MFE | -45.10 |
Consensus MFE | -29.60 |
Energy contribution | -30.85 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.30 |
Mean z-score | -1.38 |
Structure conservation index | 0.66 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.663511 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12365574 117 - 20766785 AUUCGAUGGCGUCUGGUUUAGAUUCUGCAAAUCACUGCCAGGCGUCCCCACU---GACUCCUGCGCCGUGUUCGGCGUCAUGCUGAUGAACUGCACGAUCAGCUCCAUGGCGCUGGGCUC .....((((((((((((...((((.....))))...)))))))(((......---)))......)))))((((((((((((((((((..........))))))...)))))))))))).. ( -45.80) >DroVir_CAF1 37414 114 - 1 ----GCUGGCGCCGGC--UAGGUUCUGCAAAUCGCUGCCCGGCGUGACCACAGUUGAUGCUAUCGCGGUGUCCGGCGUCAUGCUGAUAAACUGCAUGAUUAACUCCACGGCACUGGGCUC ----(((((((((.((--..(((...((.....)).)))..))((((....(((....))).)))))))).)))))(((((((.........)))))))....((((......))))... ( -39.00) >DroEre_CAF1 24598 117 - 1 GUUUGGGGGCGUCUGGUUAAGGUUCUGCAAAUCACUGCCAGGAGUCACUACC---GAUGCCAUCGCCGUGUCCGGCGUCAUGCUGAUGAACUGCAUGAUCAGCUCCAUGGCGCUGGGCUC ....((.((((((.(((...(..((((((......)))..)))..)...)))---))))))....))..((((((((((((((((((.(......).))))))...)))))))))))).. ( -48.40) >DroYak_CAF1 25357 117 - 1 GUUCGGCGACGUCUGGUUAAGGUUCUGCAAAUCACUGCCAGGAGUCACCACC---GAUGCCAGCGCCGUGUCCGGCGUCAUGCUGAUGAACUGCAUGAUCAGCUCCAUGGCGCUGGGCUC ....((.(((..(((((...((((.....))))...)))))..))).))...---....(((((((((((...((((((((((.........)))))))..))).))))))))))).... ( -51.30) >DroMoj_CAF1 36254 114 - 1 ----GCUCGCGCCACU--UAUAUUCUGCAAAUCACUUCCCGGCGUUACCACAGUGGACGCUAUUGCCGUGUCCGGUGUCAUGCUGAUGAACUGCAUGAUGAGUUCCACGGCGCUGGGUUC ----((((((((((((--(((....((((..(((.....((((((....(((.(((((((.......))))))).))).)))))).)))..))))..)))))).....))))).)))).. ( -39.90) >DroPer_CAF1 49565 111 - 1 ----AGUGGCGCCCGGC--AGGUUUUGCAGGUCACUUCCAGGCGUCACCACG---GACGCUACCGCCGUGUCCGGCGUCACGCUGAUGAACUGCAUGAUCAACUCGAGGGCGCUGGGUUC ----...(((((((((.--.((((.(((((.(((......(((((.((..((---(((((.......)))))))..)).)))))..))).))))).))))..))...)))))))...... ( -46.20) >consensus ____GGUGGCGCCUGGU_UAGGUUCUGCAAAUCACUGCCAGGCGUCACCACA___GACGCCAUCGCCGUGUCCGGCGUCAUGCUGAUGAACUGCAUGAUCAGCUCCAUGGCGCUGGGCUC .......(((((((((....((((.....))))....))))))))).............(((.(((((((......(((((((.........)))))))......))))))).))).... (-29.60 = -30.85 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:19 2006