Locus 3744

Sequence ID 2R_DroMel_CAF1
Location 12,361,166 – 12,361,257
Length 91
Max. P 0.732687
window6079

overview

Window 9

Location 12,361,166 – 12,361,257
Length 91
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 78.32
Mean single sequence MFE -25.45
Consensus MFE -14.15
Energy contribution -14.02
Covariance contribution -0.14
Combinations/Pair 1.19
Mean z-score -1.88
Structure conservation index 0.56
SVM decision value 0.43
SVM RNA-class probability 0.732687
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12361166 91 - 20766785
CGGAGAGCAAAAGACUC--------CAAAGAUCGUGUCUUUUGAUGGC-----CCAGCAAUGACACACAUUUGUCAAAACGGGUUCACUUCAAAAGAGCCCGCG---
.((....((((((((.(--------........).))))))))....)-----)..((..(((((......)))))....((((((.........)))))))).--- ( -27.50)
>DroPse_CAF1 44070 102 - 1
CAAAAAUCCAAAAACUGAACAACUGAAACGAUCGUGUCUUUUGAUGGC-----CCAGCAAUGACACACAUUUGUCAAAACGGGCUCACUUCAAAAGGCCCGGCAGAG
......................(((......(((.(((((((((.(((-----((.....(((((......)))))....)))))....))))))))).)))))).. ( -25.70)
>DroEre_CAF1 20294 91 - 1
CGGAGAGCAAAAGACUC--------CAACGAUCGUGUCUUUUGAUGGC-----CCAGCAAUGACACACAUUUGUCAAAACGGGUUCACUUCAAAAGAUCCCGCG---
.((((.........)))--------)......((((((((((((.(((-----((.....(((((......)))))....)))))....))))))))...))))--- ( -24.50)
>DroYak_CAF1 21023 91 - 1
CGGAGAGCAAAAGACUC--------CAACGAUCGUGUCUUUUGAUGGC-----CCAGCAAUGACACACAUUUGUCAAAACGGGUUCACUUCAAAAGAUCCCGCG---
.((((.........)))--------)......((((((((((((.(((-----((.....(((((......)))))....)))))....))))))))...))))--- ( -24.50)
>DroMoj_CAF1 28144 92 - 1
--------AAACGAAUC---AAC--GAUCGAUCGACUCU-UUGAUGGUCCCAGCCAGCAAUGACACACAUUUGUCAAAACGGGCCCACUUCAAAAGGCCGUCGG-AG
--------.........---...--..((((.((.(..(-(((((((.(((.(....)..(((((......)))))....))).)))..)))))..).))))))-.. ( -22.50)
>DroPer_CAF1 44169 102 - 1
CAAAAAUCGAAAAACUGAACAACUGAAUCGAUCGUGUCUUUUGAUGGC-----CCAGCAAUGACACACAUUUGUCAAAACGGGCUCACUUCAAAAGGCCCGGCGGAG
...........................(((.(((.(((((((((.(((-----((.....(((((......)))))....)))))....))))))))).)))))).. ( -28.00)
>consensus
CGGAGAGCAAAAGACUC________CAACGAUCGUGUCUUUUGAUGGC_____CCAGCAAUGACACACAUUUGUCAAAACGGGCUCACUUCAAAAGACCCCGCG___
.................................(((((..(((.(((......))).))).)))))..............(((((..........)))))....... (-14.15 = -14.02 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:15 2006