Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,360,690 – 12,360,797 |
Length | 107 |
Max. P | 0.914637 |
Location | 12,360,690 – 12,360,797 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 78.59 |
Mean single sequence MFE | -29.88 |
Consensus MFE | -14.33 |
Energy contribution | -14.22 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.26 |
Mean z-score | -2.61 |
Structure conservation index | 0.48 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.914637 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12360690 107 - 20766785 UCUAAUCCAACCUGAUGGAUUUCCCGCUGAUGGUGUGGAAAUGGUUGCACAAUUGC-UGCCCUCGCCAUUCAUCAUCCAUACAAAUCCAUCGUCAU---------UCCCCUCCAUUU .............(((((((((......((((((((((....(((.(((....)))-.)))....)))..))))))).....))))))))).....---------............ ( -28.40) >DroPse_CAF1 43778 112 - 1 --UCAUCAGGGCUGAUGGAUUUC-CACUUGUGGUGUGGAAAUGGUUGCACAAUGGCCUGCCGUUUCCAUCCAUCUUGAUCACGA--UCAGCAUCAUGCCAGCGCCUCCCCUCGAUGC --.((((((((((((((((((..-.....((((.(((((((((((.((......))..)))))))))))))))...)))).).)--))))).....((....))....))).)))). ( -37.90) >DroSec_CAF1 19577 105 - 1 --UAAUCCAACCUGAUGGAUUUCCCACUGAUGGCGUGGAAAUGGUUGCACAAUUGC-UGCUCUCGCCAUUCAUCAUCCAUACAAAUCCACCGUCAU---------UCCCCUCCAUUU --.((((((......)))))).......(((((((((((((((((.((((....).-)))....))))))...............)))).))))))---------)........... ( -21.76) >DroSim_CAF1 20027 107 - 1 UCUAAUCCAACUUGAUGGAUUUCCCGCUGAUGGUGUGGAAAUGGUUGCACAAUUGC-UGCUCUCGCCAUUCAUCUUCCAUACAAAUCCAUCGUCAU---------UCCCCUCCAUUU .............(((((((((....(....)(((((((((((((.((((....).-)))....))))).....))))))))))))))))).....---------............ ( -24.90) >DroYak_CAF1 20476 107 - 1 UCUAAUCCAACCUGAUGGAUUUCCCGCGGAUGGUGUGGAAAUCGUUGCACAAUUGC-UGCUCUCGCCAUUCAUCAUCCAUACAAAUCCAUCGUCAU---------UCCCCUCCGUUU .............(((((((((.....(((((((((((.....((.(((....)))-.)).....)))..))))))))....))))))))).....---------............ ( -28.40) >DroPer_CAF1 43881 112 - 1 --UCAUCAGGGCUGAUGGAUUUC-CACUUGUGGUGUGGAAAUGGUUGCACAAUGGCCUGCCGUUUCCAUCCAUCUUGAUCACGA--UCAGCAUCAUGCCAGCGCCUCCCCUCGAUGC --.((((((((((((((((((..-.....((((.(((((((((((.((......))..)))))))))))))))...)))).).)--))))).....((....))....))).)))). ( -37.90) >consensus __UAAUCCAACCUGAUGGAUUUCCCACUGAUGGUGUGGAAAUGGUUGCACAAUUGC_UGCCCUCGCCAUUCAUCAUCCAUACAAAUCCAUCGUCAU_________UCCCCUCCAUUU ............((.(((((((......(((((.((((....(((.((......))..)))....)))))))))........))))))).))......................... (-14.33 = -14.22 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:12 2006