Locus 3740

Sequence ID 2R_DroMel_CAF1
Location 12,358,888 – 12,359,008
Length 120
Max. P 0.881423
window6074

overview

Window 4

Location 12,358,888 – 12,359,008
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 92.92
Mean single sequence MFE -32.55
Consensus MFE -28.85
Energy contribution -29.10
Covariance contribution 0.25
Combinations/Pair 1.14
Mean z-score -1.85
Structure conservation index 0.89
SVM decision value 0.92
SVM RNA-class probability 0.881423
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12358888 120 + 20766785
UAACAUUCUGUUUCAGGCCAGAGAGCACUUUGAACAUGAUUCCAACGAUUUCCGGCUUGACCAUGUAACUCUUUAUAUUCGAACCAAAAGAGAGAAAUAUGGCUCCUUGGCUGGAGUUCU
.........(..((((..(((((....)))))..).)))..)....((.((((((((.((((((((..((((((..............))))))..)))))).))...)))))))).)). ( -30.54)
>DroSec_CAF1 17861 120 + 1
UAACAUUCUGUUUCAGGCCGGAGAGCACUUUGAACAUGAUUCCAACGAUUUCCGGCUUGACCAUGUAACUCUUUAUGUUGGAACCAAAUGACAGAAAUAUCGCUCCUUGGCUGGAGUUCU
.....(((((((((((((((((((.......(((.....)))......))))))))))))((((((((....))))).)))........))))))).....(((((......)))))... ( -35.12)
>DroSim_CAF1 18308 120 + 1
UAACAUUCUGUUUCAGGCCGGAGAGCACUUUGAACAUGAUUCCAACGAUUUCCGGCUUUACCAUGUAACUCUUUAUAUUGGAACCAAAUGACAGAAAUAUCGCUCCUUGGCUGGAGUUCU
.....(((((((..((((((((((.......(((.....)))......))))))))))..((((((((....))))).)))........))))))).....(((((......)))))... ( -31.32)
>DroYak_CAF1 18397 120 + 1
UAACAUUCUCUUUCAGGCCGGAGAGCACUUUGAAAAUGAUUGCGACUAUUUCCGGCUUCACCAUGUAACUCUUUGUAUUGGAACCAAAUGAGAGAAAGAUCGCUCCUUGGCUGGAGCUAU
........(((((((((((((((((((.((.......)).))).....))))))))))..........(((((((.........)))).))).))))))..(((((......)))))... ( -33.20)
>consensus
UAACAUUCUGUUUCAGGCCGGAGAGCACUUUGAACAUGAUUCCAACGAUUUCCGGCUUGACCAUGUAACUCUUUAUAUUGGAACCAAAUGACAGAAAUAUCGCUCCUUGGCUGGAGUUCU
.....(((((((((((((((((((.....(((..........)))...))))))))))))((((((((....))))).)))........))))))).....(((((......)))))... (-28.85 = -29.10 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:10 2006