Locus 374

Sequence ID 2R_DroMel_CAF1
Location 2,358,447 – 2,358,567
Length 120
Max. P 0.733993
window733

overview

Window 3

Location 2,358,447 – 2,358,567
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 82.04
Mean single sequence MFE -25.61
Consensus MFE -19.03
Energy contribution -18.51
Covariance contribution -0.52
Combinations/Pair 1.25
Mean z-score -1.74
Structure conservation index 0.74
SVM decision value 0.43
SVM RNA-class probability 0.733993
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2358447 120 - 20766785
CUCCCACUGCCCACUGCCCACUUCCAUCCCAUCUGAAUGCUCACCACCACAGUGGCGUACGAGUAUUUAGGGCAUUUGCCAACAAGUGCAAACAAACCUCAACGGCAAUCAUUGUGAUUU
....(((.......((((.............(((((((((((.((((....)))).....)))))))))))(((((((....)))))))..............))))......))).... ( -30.92)
>DroSec_CAF1 7927 120 - 1
CUCCCACUGCCCACUGCCCACUUCCAUCCCAUCCGAAUGCCCACCACCACAGUGGCGUACGAGUAUUUAGGGCAUUUGCCAACAAGUGCAAACAAACCUCAACGGCAAUCAUUGUGAUUU
....(((.......((((...............((.(((((.((.......))))))).)).((((((..(((....)))...))))))..............))))......))).... ( -24.82)
>DroSim_CAF1 8043 120 - 1
CUCCCACUGCCCACUGCCCACUUCCAUCCCAUCCGAAUGCCCACCACCACAGUGGCGUACGAGUAUUUAGGGCAUUUGCCAUCGAGUGCAAACAAACCUCAACGGCAAUCAUUGUGAUUU
....(((.......((((...............(((((((((.((((....)))).(((....)))...))))))))).....(((.(........))))...))))......))).... ( -26.42)
>DroEre_CAF1 8167 100 - 1
CU--------------CCCAUUUCCAUCCCAACCGAAAGCC------CACAGUGGCGCUCGAGUGUUUAGGGCAUUUGCCAGUAAUUGCAAACAAACCUCAAAGGCAAUCACUGUGAUUU
..--------------.................(....)..------((((((((.(((.(((.((((.(.(((.(((....))).)))...))))))))...)))..)))))))).... ( -22.90)
>DroYak_CAF1 7530 106 - 1
CUCCCACU--------CCCAUUUCCAUCCUAUCUAAAAGCC------CACAGUGGCGUACGAGUGUUUAGGGCAAUUACCCACAAUUGCACACAAAUCUCAAAGGCAAUCACUGUGGUUU
........--------........................(------(((((((((.(..(((.((((..(((((((......)))))).)..)))))))..).))...))))))))... ( -23.00)
>consensus
CUCCCACUGCCCACUGCCCACUUCCAUCCCAUCCGAAUGCCCACCACCACAGUGGCGUACGAGUAUUUAGGGCAUUUGCCAACAAGUGCAAACAAACCUCAACGGCAAUCAUUGUGAUUU
...............................................((((((((.((..(((........(((((((....)))))))........)))....))..)))))))).... (-19.03 = -18.51 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:45 2006