Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,352,225 – 12,352,327 |
Length | 102 |
Max. P | 0.683664 |
Location | 12,352,225 – 12,352,327 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 84.36 |
Mean single sequence MFE | -28.08 |
Consensus MFE | -15.80 |
Energy contribution | -17.30 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.21 |
Mean z-score | -2.58 |
Structure conservation index | 0.56 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.683664 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12352225 102 - 20766785 UUGCAAAAGUCGUUUGGCAUAUGUGUACAAUGUACACACACAUAUGUAUAUAUAUAUAUCCAGAUGCUAUAUCGCCAU-------AUAGUGAGGGGCGUAGAGUUCACU ((((.......((((((.(((((((((((((((......)))).)))))))))))....))))))(((...((((...-------...))))..)))))))........ ( -25.90) >DroSec_CAF1 11401 102 - 1 UUACAAAAGUCGUUUGGCAUAUGUGUACAAUGUACAUACAUGUGUAUAUAUGUAUAUAUCCAGAUGCUAUAUCGCCAU-------AUAGUGAGGGGCGUAGAGUUCACU ((((.......((((((...(((((((((((((((((....)))))))).)))))))))))))))(((...((((...-------...))))..)))))))........ ( -28.90) >DroSim_CAF1 11790 102 - 1 UUACAAAAGUCGUUUGGCAUAUGUGUACAAUGUACAUACAUGUGUAUAUAUGUAUAUAUCCAGAUGCUAUAUCGCCAU-------AUAGUGAGGGGCGUAGAGUUCACU ((((.......((((((...(((((((((((((((((....)))))))).)))))))))))))))(((...((((...-------...))))..)))))))........ ( -28.90) >DroEre_CAF1 12677 103 - 1 UAACAAAAGUCGUUUGGUAUAUGUUUACAAUGUAUGUACGUAUGUACAUAU------GGCCAGAUGAUAUAUGCCCAUAUACCAUAUACUGAGGGGCGUAGAGUUCACU .(((....((((((((((((((((..(((((((....)))).)))))))))------.)))))))))).(((((((.................)))))))..))).... ( -28.63) >consensus UUACAAAAGUCGUUUGGCAUAUGUGUACAAUGUACAUACAUAUGUAUAUAUGUAUAUAUCCAGAUGCUAUAUCGCCAU_______AUAGUGAGGGGCGUAGAGUUCACU ..........(((((((...(((((((((((((((((....)))))))).))))))))))))))))...........................((((.....))))... (-15.80 = -17.30 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:07 2006