Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,350,637 – 12,350,728 |
Length | 91 |
Max. P | 0.500000 |
Location | 12,350,637 – 12,350,728 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 87.79 |
Mean single sequence MFE | -23.68 |
Consensus MFE | -18.27 |
Energy contribution | -16.91 |
Covariance contribution | -1.36 |
Combinations/Pair | 1.26 |
Mean z-score | -1.45 |
Structure conservation index | 0.77 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12350637 91 + 20766785 GGUGGAAUCUCUGGGCUUAAAUAAUUUGUAACUGCGGUGUAAGAAAUAGCACGGGUUGGCAAAGAU--------AUGUGGCAGCCUAGAAACUGUGUAA-- .........((((((((...(((.(((((((((...((((.(....).)))).)))).)))))...--------.)))...))))))))..........-- ( -21.30) >DroSec_CAF1 9880 91 + 1 GGUGGAAUCUCUGGGCUUAAAUAAUUUGUAACUGCGGUGUAAGAAAUAGCACGGGUUGGCAAAGAU--------AUGUGGCAGCCUAGGAACCAAGUAG-- ..(((..((.(((((((...(((.(((((((((...((((.(....).)))).)))).)))))...--------.)))...))))))))).))).....-- ( -23.10) >DroSim_CAF1 10317 91 + 1 GGUGGAAUCUCUGGGCUUAAAUAAUUUGUAACUGCGGUGUAAGAAAUAGCACGGGUUGGCAAAGAU--------AUGUGGCAGCCUAGGAACCAAGUAG-- ..(((..((.(((((((...(((.(((((((((...((((.(....).)))).)))).)))))...--------.)))...))))))))).))).....-- ( -23.10) >DroEre_CAF1 11108 99 + 1 GUCGGAGUCUCUGGGCUUAAAUAAUUUGUAACUGCGGUGUAAGAAAUAGCACAGGUUGGCAAAGAUAGGAUCGUAUGUGGCAGCCUAGAAACUGAGUAG-- .....(((.((((((((...(((.(((((((((...((((.(....).)))).)))).)))))(((...)))...)))...)))))))).)))......-- ( -25.70) >DroYak_CAF1 10081 93 + 1 GACGGAAUCUCUGGGCUUAAAUAAUUUGUAACUGCGGUGUAAGAAAUAGCACAGCUUGGCAAAGAU--------AUUUCCCAGUCUAGAAACUGAGUCUUA (((......((((((((.(((((.(((((....((.((((.(....).)))).))...)))))..)--------))))...))))))))......)))... ( -25.20) >consensus GGUGGAAUCUCUGGGCUUAAAUAAUUUGUAACUGCGGUGUAAGAAAUAGCACGGGUUGGCAAAGAU________AUGUGGCAGCCUAGAAACUGAGUAG__ ..(((....((((((((.......(((((..(((.(.(((.....))).).)))....)))))..................))))))))..)))....... (-18.27 = -16.91 + -1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:06 2006