Locus 3736

Sequence ID 2R_DroMel_CAF1
Location 12,349,863 – 12,349,955
Length 92
Max. P 0.828968
window6069

overview

Window 9

Location 12,349,863 – 12,349,955
Length 92
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 88.02
Mean single sequence MFE -13.94
Consensus MFE -13.40
Energy contribution -13.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.42
Structure conservation index 0.96
SVM decision value 0.71
SVM RNA-class probability 0.828968
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12349863 92 - 20766785
CAUCA---------CCCCUU----CAGCUCCUUUAUCGCUGCAGUUCAUUGCCGCUUUUCUUUUU-ACCAUUGGUCUCGCCUUUAUUAUCAUGUCAAGGCGUAUUA
.....---------......----.............((.((((....)))).))..........-...........((((((.((......)).))))))..... ( -13.20)
>DroSec_CAF1 9103 102 - 1
CAUCCCUCCCCAAAACCCUU----CAGCUCCUUUAUCGCUGCAGUUCAUUGCCGCUUUUCUUUUUCACCAUUGGUCUCGCCUUUAUUAUCAUGUCAAGGCGUAUUA
.........((((.......----.(((.........)))((.((.....)).))...............))))...((((((.((......)).))))))..... ( -14.00)
>DroSim_CAF1 9538 102 - 1
CAUCCCUCCCCAAAACCCUA----CAGCUCCUUUAUCGCUGCAGUUCAUUGCCGCUUUUCUUUUUCACCAUUGGUCUCGCCUUUAUUAUCAUGUCAAGGCGUAUUA
.........((((.......----.(((.........)))((.((.....)).))...............))))...((((((.((......)).))))))..... ( -14.00)
>DroEre_CAF1 10367 97 - 1
--CGCCUCCCUA--ACCCUA----CAGCUCCUUUAUCGCUGCAGUUCAUUGCCGCAUUUCUUUUUC-CCAUUGGUCUCGCCUUCAUUAUCAUGUCAAGGCGUAUUA
--(((((.....--......----.............((.((((....)))).))...........-.....((.....))...............)))))..... ( -14.00)
>DroYak_CAF1 9280 101 - 1
--CCCCUCCCCA--ACACUACAUACAACUCCUUUAUCGCUGCAGUUCAUUGCCGCAUUUCUUUUUC-CCAUUGGUCUCGCCUUUAUUAUCAUGUCAAGGCGUAUUA
--..........--.......((((............((.((((....)))).))...........-...........(((((.((......)).))))))))).. ( -14.50)
>consensus
CAUCCCUCCCCA__ACCCUA____CAGCUCCUUUAUCGCUGCAGUUCAUUGCCGCUUUUCUUUUUCACCAUUGGUCUCGCCUUUAUUAUCAUGUCAAGGCGUAUUA
.....................................((.((((....)))).))......................((((((.((......)).))))))..... (-13.40 = -13.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:05 2006