Locus 3735

Sequence ID 2R_DroMel_CAF1
Location 12,349,185 – 12,349,304
Length 119
Max. P 0.905424
window6068

overview

Window 8

Location 12,349,185 – 12,349,304
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 86.84
Mean single sequence MFE -30.94
Consensus MFE -21.46
Energy contribution -22.54
Covariance contribution 1.08
Combinations/Pair 1.11
Mean z-score -2.63
Structure conservation index 0.69
SVM decision value 1.04
SVM RNA-class probability 0.905424
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12349185 119 + 20766785
UUUGUAACUGAUUGGAAAACUAAUCAACGCUGACCAAUAAAAGUCCACUGGCAUGGGAUUGGGUUUUAAAUUUAC-CGUCAUACCGUCUCUGCCCAGUUCACUGAAAAUCUAAUCAGCCU
........(((((((....)))))))..(((((........(((..(((((((.(((((.((.............-.......))))))))).)))))..)))..........))))).. ( -26.82)
>DroSec_CAF1 8446 111 + 1
UUUGUAACUGAUUGGAAAACUAAUCAACGCUGACCAAUAAAAAUCGACUGGCAUGGGAUGGGGUUUUAAAUUUAC-C--------GUCUCUAGCCAGUUCACUGAAAAUCUAAUCAGCCU
........(((((((....)))))))..(((((............(((((((..(((((((.............)-)--------)))))..)))))))..............))))).. ( -31.39)
>DroSim_CAF1 8859 111 + 1
UUUGUAACUGAUUGGAAAACUAAUCAACGCUGACCAAUAAAAGUCGACUGGCUGGGGAUGGGGUUUUAAAUUUAC-C--------GUCUCUAGCCAGUUUACUGAAAAUCUAAUCAGCCU
........(((((((....)))))))..(((((........(((.((((((((((((((((.............)-)--------)))))))))))))).)))..........))))).. ( -42.09)
>DroEre_CAF1 9691 109 + 1
UUUGUAACUGAUUGGAAAACUAAUCAACGCUGACCAAUAAAAGUCGACCGGUCUGGGAUGGGGUUUUGAAUUUUC-----------CCUCUUACCAGUUUACUGAAAAUCUAAUCAGCCU
........(((((((....)))))))..(((((........(((.(((.(((..((((.((((..........))-----------))))))))).))).)))..........))))).. ( -25.57)
>DroYak_CAF1 8615 120 + 1
UUUGUAACUGAUUGGAAAACUAAUCAACGCUGACCAAUAAAACUCGACUGGUAUUCGAUGGGGUUUUUAAGUUUAACGUCGUACCGUCUCUAGCCAGUUCAGUGAAAAUCUAAUCAGCCU
........(((((((....)))))))..(((((........(((.(((((((....(((((......................)))))....))))))).)))..........))))).. ( -28.82)
>consensus
UUUGUAACUGAUUGGAAAACUAAUCAACGCUGACCAAUAAAAGUCGACUGGCAUGGGAUGGGGUUUUAAAUUUAC_C________GUCUCUAGCCAGUUCACUGAAAAUCUAAUCAGCCU
........(((((((....)))))))..(((((........(((.(((((((..(((((..........................)))))..))))))).)))..........))))).. (-21.46 = -22.54 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:04 2006