| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,347,433 – 12,347,531 |
| Length | 98 |
| Max. P | 0.822986 |
| Location | 12,347,433 – 12,347,531 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 64.31 |
| Mean single sequence MFE | -16.93 |
| Consensus MFE | -12.49 |
| Energy contribution | -12.72 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.20 |
| Mean z-score | -0.82 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.822986 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12347433 98 - 20766785 GGGUGUCAGUUUGAAAAAUGCCUAGUGGCGCAUACAU-------AUAUAACUAUAUUAAGUGUAAUGAAAUAGUUACGACUUAAUAGCAUACUACAAUAAUUUGA ...(((.(((.((......(((....)))........-------.........(((((((((((((......))))).)))))))).)).))))))......... ( -18.60) >DroSec_CAF1 6736 88 - 1 GGGUGUCAGUUUGAAAAACGCCUAGUGGCACAUAUAUUACUACUACAUACAUAUAUUAAGUGUAAUGAAAUAGUUACGACUUAAUAGC----------------- ((((((...........))))))(((((...........))))).........(((((((((((((......))))).))))))))..----------------- ( -17.50) >DroEre_CAF1 8063 80 - 1 GGGUGUCAGUUUGGAAUUAGUCUAGUGACACAUAU-----------C--ACCGUAUCGAGUGCAUUGAAAUAGUUACGAUUGGAAAG------------AUUUGA ..((((((..(((((.....)))))))))))....-----------.--.(((.((((...((.........))..)))))))....------------...... ( -14.70) >consensus GGGUGUCAGUUUGAAAAAAGCCUAGUGGCACAUAUAU_______A_AUAACUAUAUUAAGUGUAAUGAAAUAGUUACGACUUAAUAGC___________AUUUGA ..((((((.(.............).))))))......................(((((((((((((......))))).))))))))................... (-12.49 = -12.72 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:03 2006