Locus 3730

Sequence ID 2R_DroMel_CAF1
Location 12,336,383 – 12,336,482
Length 99
Max. P 0.605017
window6058

overview

Window 8

Location 12,336,383 – 12,336,482
Length 99
Sequences 4
Columns 101
Reading direction forward
Mean pairwise identity 86.90
Mean single sequence MFE -22.98
Consensus MFE -19.82
Energy contribution -20.70
Covariance contribution 0.88
Combinations/Pair 1.10
Mean z-score -1.44
Structure conservation index 0.86
SVM decision value 0.14
SVM RNA-class probability 0.605017
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12336383 99 + 20766785
UUAAUUUCUACCUUUUUUU--UAUAUAUAUUUUGAUCGUGUUCUUUUGGAGUGGACCGCACCUAUGGCCAUCGCCAUCGAUCGAUGUGUAGAGCUAGUCAA
................(((--((((((....(((((((((.(((........))).)))....(((((....))))).)))))))))))))))........ ( -19.70)
>DroSec_CAF1 35032 100 + 1
UUAAUUUAUACCUUU-UUUCACAUAUAUAUUUCGAUCGUGUUCUUUUGGAGUGGACCGCACCCAUGGCCAUCGCCAGCGAUCGAAGUGUAGAGCUAGUCAA
...............-.........((((((((((((((.......(((.(((.....))))))((((....))))))))))))))))))........... ( -28.70)
>DroSim_CAF1 34571 101 + 1
UUAAUUUCCACCUUUUUUUCACAUAUAUAUUUUGAUCGUGUUCUUUUGGAGUGGACCGCACCCAUGGCCAUCGCCAGCGAUCGAAGUGUAGAGCUAGUCAA
.........................((((((((((((((.......(((.(((.....))))))((((....))))))))))))))))))........... ( -26.60)
>DroEre_CAF1 35149 89 + 1
UUAAUUUCUAAUUUU-U-U----CGUAUUUUUUGAUCGUGUUCUUUUGGAGUGGACCGCACCCAUUGCCAU------CGAUCGAACUGUAGAGCUAGUCAA
..........(((..-(-(----(.(((..((((((((........((((((((.......))))).))).------))))))))..))))))..)))... ( -16.90)
>consensus
UUAAUUUCUACCUUU_UUU__CAUAUAUAUUUUGAUCGUGUUCUUUUGGAGUGGACCGCACCCAUGGCCAUCGCCAGCGAUCGAAGUGUAGAGCUAGUCAA
.........................((((((((((((((.......(((.((((.......))))..)))......))))))))))))))........... (-19.82 = -20.70 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:55 2006