Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,357,634 – 2,357,754 |
Length | 120 |
Max. P | 0.985091 |
Location | 2,357,634 – 2,357,754 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.25 |
Mean single sequence MFE | -36.44 |
Consensus MFE | -32.86 |
Energy contribution | -33.18 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.06 |
Mean z-score | -1.81 |
Structure conservation index | 0.90 |
SVM decision value | 2.00 |
SVM RNA-class probability | 0.985091 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2357634 120 + 20766785 AUUCCGGCAAUCUGUCCGGCGGGCGGGGAUAUCACUGCCAAAAAGACAUUUAAUACACGCAAAUAAAUAUCGCCGGCGAGUCUCGUGUGCAGUGUACACAGACCGGAAACAGAAAGGCUA .....(((..((((((((((.(((((........))))).....((.(((((...........))))).)))))))((.((((.((((((...))))))))))))...)))))...))). ( -40.40) >DroSec_CAF1 7155 120 + 1 AUUCCGGCAAUCUGUCCGGCGGGCGGGGAUAUCACUGCCAAAAAGACAUUUAAUACACGCAAAUAAAUAUCGCCGGCGACUCUCGUGUGCAGUGUACACAGACCGGAAACAGAAAGGCUA .((((((.....((.(((((.(((((........))))).....((.(((((...........))))).)))))))))..(((.((((((...)))))))))))))))............ ( -36.80) >DroSim_CAF1 7259 120 + 1 AUUCCGGCAAUCUGUCCGGCGGGCGGGGAUAUCACUGCCAAAAAGACAUUUAAUACACGCAAAUAAAUAUCGUCGGCGACUCUCGUGUGCAGUGUACACAGACCGGAAACAGAAAGGCUA .....(((..((((((((((.(((((........)))))..............((((((((........(((....)))........))).)))))....).)))))..))))...))). ( -34.69) >DroEre_CAF1 7472 120 + 1 AUUCCGGCAAUCUGUCCGGCGGGCGGGGAUAUCACUGCCAAAAAGACAUUUAAUACACGCAAAUAAAUAUCGCCGGCGACUCUCGUGUGCAGCGCACACAGACCGGAAACAGAAAGGCUA .((((((.....((.(((((.(((((........))))).....((.(((((...........))))).)))))))))..(((.((((((...)))))))))))))))............ ( -38.80) >DroYak_CAF1 6838 120 + 1 AUUCCGGCAAUCUGUCCGGCGAGCGGGGAUAUCACUGCCAAAAGGACAUUUAAUACACGCAAAUAAAUAUCGCCGACGACUCUCGUGUGCAGCGAACACAGCCCGGAAACGGAAAGACUA .(((((((.....(((((((((((((........)))).........(((((...........))))).))))))..)))....((((.......)))).))).(....)))))...... ( -31.50) >consensus AUUCCGGCAAUCUGUCCGGCGGGCGGGGAUAUCACUGCCAAAAAGACAUUUAAUACACGCAAAUAAAUAUCGCCGGCGACUCUCGUGUGCAGUGUACACAGACCGGAAACAGAAAGGCUA .(((((((....((.(((((.(((((........))))).....((.(((((...........))))).)))))))))......((((((...)))))).).))))))............ (-32.86 = -33.18 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:44 2006