| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,335,163 – 12,335,261 |
| Length | 98 |
| Max. P | 0.912402 |
| Location | 12,335,163 – 12,335,261 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.80 |
| Mean single sequence MFE | -31.18 |
| Consensus MFE | -17.48 |
| Energy contribution | -18.52 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.56 |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.912402 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12335163 98 + 20766785 -------A-UGGAUGGGAUUUUUGGGUGC----ACCCAGAU--AGCUGGUUAGGAUGCAAAUGCA------UCUGCCAGUACGCGUAUCU--GUAUCUGCAUGUCUGUAGUAAAGUAAAG -------(-((((((.(...((((((...----.)))))).--.((((((..((((((....)))------)))))))))...).)))))--))..(((((....))))).......... ( -32.40) >DroSec_CAF1 33819 98 + 1 -------A-UGGAUGGGAUUUUUGGGUGC----ACCCAGAU--AGCUGGUCAGGAUGCAAAUGCA------UCUGCCAGUACGCGUAUCU--GUAUCUGCAUGUCUGUAGUAAAGUAAAG -------(-((((((.(...((((((...----.)))))).--.((((((..((((((....)))------)))))))))...).)))))--))..(((((....))))).......... ( -32.40) >DroEre_CAF1 33929 96 + 1 -------A-----UGGGAUUUUUGGGUGC----ACCCAGAU--AGCUGGUUAGGAUGCAAAUGCAUCUGCAUCUGCCAGUACGCGUAUCU--GUAUCUGCAUGUCUGUAGUAAAGU---- -------(-----((.(...((((((...----.)))))).--.((((((..(((((((........))))))))))))).).)))..((--....(((((....)))))...)).---- ( -29.80) >DroYak_CAF1 33373 90 + 1 -------A-----UGGGAUUUUUGGGUGC----ACCCAGAU--AGCUGGUUAGGAUGCAAAUGCA------UCUGCCAGUACGCGUAUCU--GUAUCUGCAUGUCUGUAGUAAAGU---- -------(-----((.(...((((((...----.)))))).--.((((((..((((((....)))------))))))))).).)))..((--....(((((....)))))...)).---- ( -29.00) >DroAna_CAF1 31921 103 + 1 UGGAUGGAUUGGAUGGGAUGGAUGGGUGUUGGGACACAGAUGCAGCUG-CAAGUGUGCC-GUGCA------UCUGUGAGUACGAGUAUCUAAGUAUCUGCAUGUCUGUAGU--------- ...((((((...((((((((..(((((((((...((((((((((.(.(-((....))).-)))))------))))))....))).))))))..))))).)))))))))...--------- ( -32.30) >consensus _______A_UGGAUGGGAUUUUUGGGUGC____ACCCAGAU__AGCUGGUUAGGAUGCAAAUGCA______UCUGCCAGUACGCGUAUCU__GUAUCUGCAUGUCUGUAGUAAAGU____ ...............((((.(((((((......)))))))....((((((.(((.(((....)))......)))))))))......))))......(((((....))))).......... (-17.48 = -18.52 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:52 2006