| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,334,134 – 12,334,233 |
| Length | 99 |
| Max. P | 0.622229 |
| Location | 12,334,134 – 12,334,233 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 81.08 |
| Mean single sequence MFE | -20.10 |
| Consensus MFE | -15.89 |
| Energy contribution | -16.00 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.622229 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12334134 99 - 20766785 AAAAAAAUAAAUGCAAAAA--GAAGCAAAUGGAAAAACAAAACCAGCUGGGUCGGUGAAUAAAGCUGAGUGCAUCUGGGCCAGGCUAGCCGGCAAAUCUCU ...........(((.....--...)))...(((.........((((.((.((((((.......))))).).)).))))(((.((....)))))...))).. ( -21.60) >DroEre_CAF1 32742 83 - 1 AAAAA------------------AGCAAAUGGAAAAACAAAACCAGCUGUGUCGGUGAAAAGUGCUGAGUGCAUCUGGGCCAGGCUAGCCGGCAAAUCUCU .....------------------.......(((.........((((.(((((((((.......))))).)))).))))(((.((....)))))...))).. ( -20.70) >DroYak_CAF1 32262 96 - 1 CAAAA-----AUGCAAAAAAUCAAACAAAUGGAAAAACAAAACCAGCUGAGUUGGUGAAUAAAUCUGAGUGCAUCUGGGCCAGGCUAGCCGGCAAAUCGCU .....-----(((((.....(((......((......))..((((((...)))))).........))).)))))....(((.((....)))))........ ( -18.00) >consensus AAAAA_____AUGCAAAAA___AAGCAAAUGGAAAAACAAAACCAGCUGAGUCGGUGAAUAAAGCUGAGUGCAUCUGGGCCAGGCUAGCCGGCAAAUCUCU ..........................................((((.((..(((((.......)))))...)).))))(((.((....)))))........ (-15.89 = -16.00 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:51 2006