Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,333,953 – 12,334,055 |
Length | 102 |
Max. P | 0.991493 |
Location | 12,333,953 – 12,334,055 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.54 |
Mean single sequence MFE | -32.27 |
Consensus MFE | -28.80 |
Energy contribution | -28.67 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -2.61 |
Structure conservation index | 0.89 |
SVM decision value | 2.27 |
SVM RNA-class probability | 0.991493 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12333953 102 + 20766785 ------------------AAGCAAAAGCACCAGCGACCGAGCACGCAUUUCGAAAUGCGAGUGCGAGUGUCGGAGGCAAUUGAAAUGCUUUGCAGCAAAAGCAAAUCGAACUGCUCUGAA ------------------...((...((((..((......)).((((((....)))))).))))...))((((((.((.((((..((((((......))))))..))))..)))))))). ( -31.40) >DroSec_CAF1 32579 101 + 1 ------------------AAGCAAAAGCACCAGCGACCGAGCACGCAUUUCGAAAUGCGAGUGCGAGUGUCGGAGGCAAUUGAAAUGCUUUGCAGCAAAAGCAAAUCGAACUGCACUGA- ------------------..((....))..((((((((..(((((((((....)))))..))))..).))))...(((.((((..((((((......))))))..))))..))).))).- ( -30.10) >DroSim_CAF1 30965 101 + 1 ------------------AAGCAAAAGCACCAGCGACCGAGCACGCAUUUCGAAAUGCGAGUGCGAGUGUCGGAGGCAAUUGAAAUGCUUUGCAGCAAAAGCAAAUCGAACUGCACUGA- ------------------..((....))..((((((((..(((((((((....)))))..))))..).))))...(((.((((..((((((......))))))..))))..))).))).- ( -30.10) >DroYak_CAF1 32064 119 + 1 GGAGCAAGAGCAAAAGCAAAGCAAAAGCGCCAGCAAGCGAAAACGCAUUUCGAAAUGCGAGUGCGAGUGUCGGAGGCAAUUGAAAUGCUUUGCAGCAAAAGCAAAUCGAACUGCUCUGA- ......((((((...((((((((...((((..(((..(((((.....)))))...)))..))))...(((.....))).......)))))))).((....)).........))))))..- ( -37.50) >consensus __________________AAGCAAAAGCACCAGCGACCGAGCACGCAUUUCGAAAUGCGAGUGCGAGUGUCGGAGGCAAUUGAAAUGCUUUGCAGCAAAAGCAAAUCGAACUGCACUGA_ ....................(((...((.((.(((..((.((.((((((....)))))).)).))..))).))..))..((((..((((((......))))))..))))..)))...... (-28.80 = -28.67 + -0.12)
Location | 12,333,953 – 12,334,055 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.54 |
Mean single sequence MFE | -31.30 |
Consensus MFE | -26.89 |
Energy contribution | -26.82 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.11 |
Mean z-score | -2.22 |
Structure conservation index | 0.86 |
SVM decision value | 1.52 |
SVM RNA-class probability | 0.961036 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12333953 102 - 20766785 UUCAGAGCAGUUCGAUUUGCUUUUGCUGCAAAGCAUUUCAAUUGCCUCCGACACUCGCACUCGCAUUUCGAAAUGCGUGCUCGGUCGCUGGUGCUUUUGCUU------------------ ....((((((...((..((((((......))))))..))....(((..((((....((((..(((((....)))))))))...))))..)))....))))))------------------ ( -31.30) >DroSec_CAF1 32579 101 - 1 -UCAGUGCAGUUCGAUUUGCUUUUGCUGCAAAGCAUUUCAAUUGCCUCCGACACUCGCACUCGCAUUUCGAAAUGCGUGCUCGGUCGCUGGUGCUUUUGCUU------------------ -(((((((((((.((..((((((......))))))..))))))))....(((....((((..(((((....)))))))))...)))))))).((....))..------------------ ( -30.70) >DroSim_CAF1 30965 101 - 1 -UCAGUGCAGUUCGAUUUGCUUUUGCUGCAAAGCAUUUCAAUUGCCUCCGACACUCGCACUCGCAUUUCGAAAUGCGUGCUCGGUCGCUGGUGCUUUUGCUU------------------ -(((((((((((.((..((((((......))))))..))))))))....(((....((((..(((((....)))))))))...)))))))).((....))..------------------ ( -30.70) >DroYak_CAF1 32064 119 - 1 -UCAGAGCAGUUCGAUUUGCUUUUGCUGCAAAGCAUUUCAAUUGCCUCCGACACUCGCACUCGCAUUUCGAAAUGCGUUUUCGCUUGCUGGCGCUUUUGCUUUGCUUUUGCUCUUGCUCC -..(((((((........((....)).((((((((....((.((((..(((....((....((((((....))))))....)).)))..)))).)).))))))))..)))))))...... ( -32.50) >consensus _UCAGAGCAGUUCGAUUUGCUUUUGCUGCAAAGCAUUUCAAUUGCCUCCGACACUCGCACUCGCAUUUCGAAAUGCGUGCUCGGUCGCUGGUGCUUUUGCUU__________________ ......((((...((..((((((......))))))..))....(((..((((....((((..(((((....)))))))))...))))..)))....)))).................... (-26.89 = -26.82 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:50 2006