Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,332,011 – 12,332,125 |
Length | 114 |
Max. P | 0.804480 |
Location | 12,332,011 – 12,332,125 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.06 |
Mean single sequence MFE | -31.99 |
Consensus MFE | -22.81 |
Energy contribution | -22.32 |
Covariance contribution | -0.49 |
Combinations/Pair | 1.37 |
Mean z-score | -1.15 |
Structure conservation index | 0.71 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.804480 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12332011 114 + 20766785 AUAACGACAAUGCCACUAUCAACUGUGCUGCCAGAUAUAUGGGAGCCUGGUGGUACAGAGAAUGCCUUAGCAGGUAAGGUUUUUGACCUUUUCCCAAGAUUCCAAG------AUCAUAGU .......(((.(((........((((((..((((............))))..))))))....(((((....))))).)))..)))............((((....)------)))..... ( -28.50) >DroSec_CAF1 30705 109 + 1 AUAACGACAAUGCCACUAUCAACUGUGCCGCCAGAUACAUGGGAGCCUGGUGGUACAGGGAAUGUCUUAGCAGGUAA---UAUUGCCCAUUUCCG--CAUCCCAAG------AUCGUAGU ...(((((..............((((((((((((............))))))))))))((.((((.......((((.---...)))).......)--))).))..)------.))))... ( -31.94) >DroSim_CAF1 29156 112 + 1 AUAACGACAAUGCCACCAUCAACUGUGCCGCCAGAUACAUGGGAGCCUGGUGGUACAGAGAAUGUCUUAGCAGGUACGGUUUUUGCCCUUGCCCC--GAUCCCAAG------AUCGUAGU .....(((((((....)))...((((((((((((............))))))))))))....))))...(((((...(((....))))))))..(--((((....)------)))).... ( -35.00) >DroEre_CAF1 30627 112 + 1 ACAACGACAAUGCCACUAUCAACUGUGCCGCCAGAUACAUAGGAGCCUGGUGGUACAGGGAAUGUCUUGGCAGGUAAGGUUUUUGCCCUUUUCCG--GAGCCCAGA------ACCAACAU ..........(((((....((.((((((((((((............))))))))))))....))...))))).....((((((.((((......)--).))..)))------)))..... ( -36.80) >DroYak_CAF1 30176 112 + 1 AUAACGACAAUGCCACCAUCAAUUGUGCCGCCAGAUACAUGGGAGCUUGGUGGUACAGGGAAUGUCUGGGCAGGUAAGGAUUUUACCCUUUUUUG--AAUCCCAGG------AUCACCAU ..........((((((((........((..(((......)))..)).))))))))..((((...((((((((((.((((.......)))).))))--...))))))------.)).)).. ( -32.30) >DroAna_CAF1 28181 108 + 1 AUAACGAUCGUAGUAACAUUAAUUGUGCCGCCAAAUAUUUUGGGGCCUGGUGGUACAACGACUGCAUGGCCAGGUAAUUAUU----------CAA--GACUACAAGUUGUGGAACUUUUU (((((....(((((...........((((.((((.....))))((((..(..((......))..)..)))).))))......----------...--.)))))..))))).......... ( -27.40) >consensus AUAACGACAAUGCCACCAUCAACUGUGCCGCCAGAUACAUGGGAGCCUGGUGGUACAGGGAAUGUCUUAGCAGGUAAGGUUUUUGCCCUUUUCCG__GAUCCCAAG______AUCAUAGU ..........((((........((((((((((((............))))))))))))....(((....)))))))............................................ (-22.81 = -22.32 + -0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:48 2006