Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,330,460 – 12,330,555 |
Length | 95 |
Max. P | 0.716532 |
Location | 12,330,460 – 12,330,555 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.94 |
Mean single sequence MFE | -13.52 |
Consensus MFE | -8.52 |
Energy contribution | -9.02 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.32 |
Structure conservation index | 0.63 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.716532 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12330460 95 + 20766785 -------------CAACUUUGGUAGCCGACAUGCUCUGUCACAUUAUUCCAAAAGUUGUCAAAAACCAAAAAAGAAAAAAA-ACUAAAA--AAAA--ACAUAACAUGA------UCUGA- -------------(((((((((.....((((.....))))........)).))))))).......................-.......--....--...........------.....- ( -9.12) >DroSec_CAF1 29178 96 + 1 -------------CAACUUUGGUAGCCGACAGGCCCUGUCACAUUAUUCCAAAAGUUGUCAAAAACCAAAAAAAAAUA-AA-AAUAAAACAAAAA--ACACAACAUGA------UCUGA- -------------(((((((((.....(((((...)))))........)).)))))))....................-..-.............--...........------.....- ( -10.82) >DroSim_CAF1 27609 90 + 1 -------------CAACUUUGGUAGCCGACAGGCCCUGUCACAUUAUUCCAAAAGUUGUCAAAAACCAAAAAAAA----AA-ACUAAAA---AAA--AAAUAUCAUGA------UCUGA- -------------(((((((((.....(((((...)))))........)).))))))).................----..-.......---...--...........------.....- ( -10.82) >DroEre_CAF1 29387 100 + 1 UGAGACAAAAAGGCAACUUUGGUAGCCGACAGGCCCUGUCACAUUAUUCGAAAAGUUGUCAAAAAGCAAAAAGA--------ACUCAAA--AAAG--AAAUAACA-GA------UCGGA- ...(((((...(((.((....)).)))(((((...)))))...............)))))..............--------.......--....--........-..------.....- ( -16.40) >DroYak_CAF1 28572 104 + 1 UGAGACAAAAAGGCAACUUUGGUAGCCGACAGGCCCUGUCACAUUAUUCCAAAUGUUGUCAGAAACCGAAAAGA--------ACUCAAA--AAAGUAAAAUAACAUGA------UCGGAU ((((....((((....))))(((.(((....))).(((.((((((......)))).)).)))..))).......--------.))))..--.................------...... ( -21.00) >DroAna_CAF1 27002 115 + 1 UGAAACAAAAGUUAAACUUUGGUAGCCGACAGGCCCUGUCACAUUAUUCCAAAAGUUGUCAAAAAAAAAACAAUAAAAAAGAACAAUU---UAAA--AUAUAUCGUGAAAAAUAUCACAC .......((((.....))))(((((((....)))....((((..(((.....((((((((....................).))))))---)...--..)))..))))....)))).... ( -12.95) >consensus _____________CAACUUUGGUAGCCGACAGGCCCUGUCACAUUAUUCCAAAAGUUGUCAAAAACCAAAAAAAA____AA_ACUAAAA__AAAA__AAAUAACAUGA______UCUGA_ .............(((((((((.....(((((...)))))........))))).)))).............................................................. ( -8.52 = -9.02 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:46 2006