Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,328,944 – 12,329,064 |
Length | 120 |
Max. P | 0.961459 |
Location | 12,328,944 – 12,329,064 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.78 |
Mean single sequence MFE | -24.86 |
Consensus MFE | -20.28 |
Energy contribution | -20.24 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.05 |
Mean z-score | -2.04 |
Structure conservation index | 0.82 |
SVM decision value | 1.53 |
SVM RNA-class probability | 0.961459 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12328944 120 + 20766785 CUGCUAGUGGAGCUCGGCAAUCACAAAUUGUUGCCCACAGCCCAGGCCCAUUAUUUGCCCUACCACGUGUGAAAUAUUUUCACAUGCCACUUCAUUUAUUUACUUCACCACUGCGCCAAA ..((((((((.(((.((((((........))))))...)))...(((.........)))......((((((((.....)))))))).....................)))))).)).... ( -28.60) >DroSec_CAF1 27684 114 + 1 CAGCUAGUGGAGCUCCGCAAUCACAAAUUGUUGCCCACAGC------CCAUUAUUUGCCCUACCACGUGUGAAAUAUUUUCACAUGCCACUUCAUUUAUUUACUUCAGCACUGCGCCAAA ..((((((((.(((..(((((........)))))....)))------))))).............((((((((.....))))))))....................)))........... ( -22.70) >DroSim_CAF1 25850 114 + 1 CAGCUAGUGGAGCUCCGCAAUCACAAAUUGUUGCCCACAGC------CCAUUAUUUGCCCUACCACGUGUGAAAUAUUUUCACAUGCCACUUCAUUUAUUUACUUCAGCACUGCGCCAAA ..((((((((.(((..(((((........)))))....)))------))))).............((((((((.....))))))))....................)))........... ( -22.70) >DroEre_CAF1 27930 114 + 1 CAGCUAGUGGAGCUCCACAAUCACAAAUUGUUGCCCACAGC------GCAUUAUUUGCCCUACCACGUGUGAAAUAUUUUCCCAUGCCACUUCAUUUAUGUACUUCAGCACUGUGCGAAA ..(((.((((.((...(((((.....))))).)))))))))------(((.....)))....(((((((((((.(((......(((......)))....))).)))).))).))).)... ( -23.70) >DroYak_CAF1 27055 112 + 1 CAGCUAGUGGUGCUCCACAAUCACAAAUUGUUGCCCACAGC------GCAUUAUUUGCCCUACCACGUGUGAAAUAUUUUCACAUGCCACUUUAUUUAUGUACUUCAGCACUG--CAAAA ..(((.((((.((...(((((.....))))).)))))))))------......(((((.......((((((((.....))))))))............(((......)))..)--)))). ( -26.60) >consensus CAGCUAGUGGAGCUCCGCAAUCACAAAUUGUUGCCCACAGC______CCAUUAUUUGCCCUACCACGUGUGAAAUAUUUUCACAUGCCACUUCAUUUAUUUACUUCAGCACUGCGCCAAA ..(((.((((.((...(((((.....))))).)))))))))........................((((((((.....)))))))).................................. (-20.28 = -20.24 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:45 2006