Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,357,481 – 2,357,594 |
Length | 113 |
Max. P | 0.915221 |
Location | 2,357,481 – 2,357,594 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.83 |
Mean single sequence MFE | -29.66 |
Consensus MFE | -24.78 |
Energy contribution | -24.54 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.70 |
Structure conservation index | 0.84 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.915221 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2357481 113 + 20766785 AAGUCAUCAUCGUCGGCCACGUGAAAUAGCGAAAGUUUACCUCACAACUACCACAUAUUUUACAGAUGUCAGA-------UAGCGCGUAUGCGGGCUACGAACUUCCUAAUCCUGGCCAA ..............(((((.((((...(((....)))....))))...................((.((..(.-------((((.((....)).)))))..)).)).......))))).. ( -27.40) >DroSec_CAF1 7002 113 + 1 AAGUCAUCAUCGUUGGCCACGUGAAAUAGCGAAAGUUUACCUCACAACUACCACAUACUUUACAGAUGUCAGA-------UAGCGCGUAUGCGGGCUACGAACUUCCUAAUCCUGGCCAA ............(((((((.((((...(((....)))....))))...................((.((..(.-------((((.((....)).)))))..)).)).......))))))) ( -28.10) >DroSim_CAF1 7106 113 + 1 AAGUCAUCAUCGUUGGCCACGUGAAAUAGCGAAAGUUUACCUCACAACUACCACAUACUUUACAGAUGUCAGA-------UAGCGCGUAUGCGGGCUACGAACUUCCUAAUCCUGGCCAA ............(((((((.((((...(((....)))....))))...................((.((..(.-------((((.((....)).)))))..)).)).......))))))) ( -28.10) >DroEre_CAF1 7316 120 + 1 AAGUCAUCAUCGUCGGCCACGUGAAAUAGCGAAAGUUUACCUCACAACUACUACAUACUUUGCAGAUGGCAGAUAGCAGAUAGCCCGAAUGCGGGCUACGAACAUCCUAAUUCUGGCCAA ..............(((((.((((...(((....)))....))))...................((((((.....))...(((((((....)))))))....)))).......))))).. ( -34.20) >DroYak_CAF1 6713 113 + 1 AAGUCAUCAUAGUCGGCCACGUGAAAUAGCGAAAGUUUACCUCACAUCUACGACAUACUUUACAGAUGUCAGA-------UAGCGCGUAUGCGGGCUACCAACUUCCUAAUUCUGGCCAA ..............(((((.((((...(((....)))....))))......(((((.((....))))))).(.-------((((.((....)).)))).).............))))).. ( -30.50) >consensus AAGUCAUCAUCGUCGGCCACGUGAAAUAGCGAAAGUUUACCUCACAACUACCACAUACUUUACAGAUGUCAGA_______UAGCGCGUAUGCGGGCUACGAACUUCCUAAUCCUGGCCAA ..............(((((.((((...(((....)))....))))...................(((....((.......((((.((....)).))))......))...))).))))).. (-24.78 = -24.54 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:43 2006