| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,326,666 – 12,326,758 |
| Length | 92 |
| Max. P | 0.971723 |
| Location | 12,326,666 – 12,326,758 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.38 |
| Mean single sequence MFE | -26.70 |
| Consensus MFE | -16.69 |
| Energy contribution | -17.50 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.63 |
| SVM decision value | 1.68 |
| SVM RNA-class probability | 0.971723 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12326666 92 + 20766785 UUUGAAUUUGUCUCAGCGUCG----UCCGCAGCGGAAGUUGUGGCAAAAGUUCAACAGAA-UGCAUAUUAUAUGUGGCAACGG--A-AGAGUGAAGU--------------------GAA .....((((..(((.((...(----.(((((((....))))))))....((((....)))-)))........(.((....)).--)-.)))..))))--------------------... ( -22.50) >DroSec_CAF1 25411 93 + 1 UUUGAAUUUGUCUCAGCGUCG----UCCGCAGCGGAAGUUGUGGCAAAAGUUCAGCAGAACUGCAUAUUAUAUGAGGCAAGGA--A-AGAGUGUAGU--------------------GAA (((...(((((((((.....(----.(((((((....))))))))...(((((....)))))..........)))))))))..--.-))).......--------------------... ( -28.80) >DroSim_CAF1 23579 95 + 1 UUUGAAUUUGUCUCAGCGUCG----UCCGCAGCGGAAGUUGUGGCAAAAGUUCAGCAGAACUGCAUAUUAUAUGAGGCAAGGAGGA-AGAGUGUAGU--------------------GAA ......(((((((((.....(----.(((((((....))))))))...(((((....)))))..........))))))))).....-..........--------------------... ( -28.40) >DroEre_CAF1 25570 87 + 1 UUUGAAUUUCUCUCAACGUCG----UGCGCAGCGGAAGUUGUGGCAAAAGUUCAGCCGAA-UGCAU-----AUGAGGCAGCGG--A-AGAGUGAAAU--------------------AAA .....(((((.((((((....----((((((((....))))).)))...)))...(((..-(((..-----.....))).)))--.-.))).)))))--------------------... ( -25.60) >DroYak_CAF1 24710 107 + 1 UUUGAAUUUCUCUCAACGUCG----UUCGCAGCGGAAGUUGUGGCAAAAGUUCAGCCGAA-UGCAU-----AUGAGCCAACGG--A-AGAGUGAAAUAUGUACAUAUGUAUAUACAUACA .....(((((.(((..(((.(----((((((((....)))))(((.........)))...-.....-----..))))..))).--.-.))).)))))((((((....))))))....... ( -28.50) >DroAna_CAF1 23150 98 + 1 UUUGAAUUUGUCUCUCCGCCGCCAGUCCGCAACGGAAGUUGUGGCAAAAGUUCACUCAAA-UGCAUAUGAGACGUGGUAAGUGGUAAAAAAAAUAAA---------------------AA ......(((..(.((..(((((..(.(((((((....)))))))).........((((..-......))))..))))).)).)..))).........---------------------.. ( -26.40) >consensus UUUGAAUUUGUCUCAGCGUCG____UCCGCAGCGGAAGUUGUGGCAAAAGUUCAGCAGAA_UGCAUAUUAUAUGAGGCAACGG__A_AGAGUGAAAU____________________GAA .......((((((((............((((((....))))))(((....(((....))).)))........))))))))........................................ (-16.69 = -17.50 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:40 2006