Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,321,679 – 12,321,785 |
Length | 106 |
Max. P | 0.684343 |
Location | 12,321,679 – 12,321,785 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.73 |
Mean single sequence MFE | -24.73 |
Consensus MFE | -21.80 |
Energy contribution | -21.92 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.09 |
Mean z-score | -1.45 |
Structure conservation index | 0.88 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.684343 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12321679 106 - 20766785 AUUCGAACCGUUUGAAUCCAAAUUGAGGUUUAAUUUUCUUUGUUAGCCGAAGGAAAUAGAAAC------AGAAAAC-------AAAACCCGUUCUGAUUUUGAGAUCAGCUCGGUU-UCG .(((((((((((((....)))))...))))).((((((((((.....)))))))))).)))..------.((((..-------.....(((..((((((....))))))..)))))-)). ( -24.61) >DroSec_CAF1 20436 105 - 1 AUUCGAACCGUUUGAAUCCAAAUUGAGGUUUAAUUUUCUUUGUUAGCCGAAGGAAAUAGAAAC------AGA-AAC-------AAAACCCGUUCUGAUUUUGAGAUCAGAUCGGUU-UCG .(((((((((((((....)))))...))))).((((((((((.....)))))))))).)))..------.((-((.-------.....(((.(((((((....))))))).)))))-)). ( -26.50) >DroSim_CAF1 18609 105 - 1 AUUCGAACCGUUUGAAUCCAAAUUGAGGUUUAAUUUUCUUUGUUAGCCGAAGGAAAUAGAAAC------AGA-AAC-------AAAACCCGUUCUGAUUUUGAGAUCAGCUUGGUU-UUU .(((((((((((((....)))))...))))).((((((((((.....)))))))))).)))..------...-...-------((((((....((((((....))))))...))))-)). ( -23.60) >DroEre_CAF1 20520 105 - 1 AUUCGAACCGUUUGAAUCCAAAUUGAGGUUUAAUUUUCUUUGUUAGCCGAAGGAAAUAGAAAC------AGA-AAC-------AAAACCCGUUCUGAUUUUGAAAUCAGCGCGGUU-UUU .(((((((((((((....)))))...))))).((((((((((.....)))))))))).)))..------...-...-------((((.((((.((((((....)))))).)))).)-))) ( -26.00) >DroYak_CAF1 18882 111 - 1 AUUCGAACCGUUUGAAUCCAAAUUGAGGUUUAAUUUUCUUUGUUGGCCGAAGGAAAUAGAAACAGAAACAGA-AAC-------AAAACCCGUUCUGAUUUUGAGAUCAGCUCGGUU-UUU .(((((((((((((....)))))...))))).((((((((((.....)))))))))).)))...........-...-------((((.(((..((((((....))))))..))).)-))) ( -25.00) >DroAna_CAF1 18451 113 - 1 AUUCGAACCGUUUGAAUCCAAAUUGAGGUUUAAUUUUCAUUGUUAGGCGGGGGAAAUAGAAAC------AGA-AACAGAAACAAAAACCCGUUCUGAUUUUGAGAUCAGCUAGAGUCUUC ((((((((((((((....)))))...)))))...(((((..((((((((((............------...-..............)))).))))))..))))).......)))).... ( -22.65) >consensus AUUCGAACCGUUUGAAUCCAAAUUGAGGUUUAAUUUUCUUUGUUAGCCGAAGGAAAUAGAAAC______AGA_AAC_______AAAACCCGUUCUGAUUUUGAGAUCAGCUCGGUU_UUU .(((((((((((((....)))))...))))).((((((((((.....)))))))))).)))...........................(((..((((((....))))))..)))...... (-21.80 = -21.92 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:37 2006