Locus 3714

Sequence ID 2R_DroMel_CAF1
Location 12,316,750 – 12,316,856
Length 106
Max. P 0.993904
window6034

overview

Window 4

Location 12,316,750 – 12,316,856
Length 106
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 92.59
Mean single sequence MFE -24.95
Consensus MFE -23.35
Energy contribution -23.68
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.88
Structure conservation index 0.94
SVM decision value 2.43
SVM RNA-class probability 0.993904
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12316750 106 - 20766785
-------------UUUCGAGACCGUAAACUAGGUUUAUGGGUAGAA-AAACACAAACACGGCAAAUGAGUGUAGAUAAACUUUAACUACCCUAGACCCAAAUGCGGCACGAGCAAGUGAA
-------------.((((.(.(((((.....((((((.((((((..-........((((.........)))).((......))..))))))))))))....)))))).))))........ ( -26.90)
>DroSec_CAF1 15511 106 - 1
-------------UUUCCAGACCGUAAACUAGGUUUAUGGGUAGAA-AAACACAAACACGGCAAAUGAGUGUAGAUAAACUUUAACUACCCUAGACCCAAAUGCGGCACGAGCAAGUGAA
-------------........(((((.....((((((.((((((..-........((((.........)))).((......))..))))))))))))....)))))(((......))).. ( -25.40)
>DroSim_CAF1 13674 106 - 1
-------------UUUCCAGACCGUAAACUAGGUUUAUGGGUAGAA-AAACACAAACACGGCAAAUGAGUGUAGAUAAACUUUAACUACCCUAGACCCAAAUGCGGCACGAGCAAGUGAA
-------------........(((((.....((((((.((((((..-........((((.........)))).((......))..))))))))))))....)))))(((......))).. ( -25.40)
>DroEre_CAF1 15661 106 - 1
-------------UUUCCAGACCGUAAAGUAGGUUUAUGGGUAGAA-AAACACAAACACGGCAAAUGAGUGUAGAUAAACUUUAACUACCCUAGACCCAAAUGCGGCACGAGCAAGUGAA
-------------........(((((.....((((((.((((((..-........((((.........)))).((......))..))))))))))))....)))))(((......))).. ( -25.40)
>DroYak_CAF1 13973 107 - 1
-------------UUUCCAGACCGUAAAGUAGGUUUAUGGGUAGAAAAAACACAAACACGGCAAAUGAGUGUAGAUAAACUUUAACUACCCUAGACCCAAAUGCGGCACGAGUAAGUGAA
-------------........(((((.....((((((.((((((...........((((.........)))).((......))..))))))))))))....)))))(((......))).. ( -25.40)
>DroAna_CAF1 13238 119 - 1
UGAUUUUUUUGUAUUUUUAACCAGUAAAGUAGGUUUAUGGGUAGAA-AAAAACAAACACGGCAAAUGAGUGUAGAUAAACUUUAACUACCCUAGACCCAAAUGCGGCACGAGCAAAUGAA
.......((((((((((........))))))((((((.((((((..-........((((.........)))).((......))..))))))))))))))))(((.......)))...... ( -21.20)
>consensus
_____________UUUCCAGACCGUAAACUAGGUUUAUGGGUAGAA_AAACACAAACACGGCAAAUGAGUGUAGAUAAACUUUAACUACCCUAGACCCAAAUGCGGCACGAGCAAGUGAA
.....................(((((.....((((((.((((((...........((((.........)))).((......))..))))))))))))....)))))(((......))).. (-23.35 = -23.68 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:32 2006