| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,308,458 – 12,308,560 |
| Length | 102 |
| Max. P | 0.741883 |
| Location | 12,308,458 – 12,308,560 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.75 |
| Mean single sequence MFE | -31.23 |
| Consensus MFE | -20.18 |
| Energy contribution | -19.68 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.741883 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12308458 102 - 20766785 --AAC-UC--UUU------------UCAGGAAUGGAAGGAGGCAUGGAAGCAGAUUUGGGUGCCCGGCUGGAAGGAGAUCUGGGUGCCUGGAUGGAAAAAGAUCUG-GAAGCCAGUGGUC --..(-((--(((------------(((....)))))))))((.(((...((((((((((..(((((((......))..)))))..)))...(....).)))))))-....))))).... ( -34.30) >DroPse_CAF1 7679 104 - 1 CCAUU-UU--CUU------------ACAGGAAUGGAAAGAGGCAUGGAAACAGAUUUGGGUCCCUGGCUGGAAAGAGAUCUGGGUGCCUGGUUGGAAGAAGAUCUG-GAAACCAGUGGUC (((((-((--...------------...)))))))....((((.((....)).(((..((((.((........)).))))..)))))))((((...((.....)).-..))))....... ( -28.50) >DroWil_CAF1 7043 115 - 1 --AAUUUU--CUUUCCACAACACCAAAAGGAAUGGAAAGAGGCAUGGAAACAAAUUUGGGUGCCCGGCUGGAAAGAAAUCUGGGUGCCAGGAUGGAAGAAAAUCUG-GAAGCCCGUUGUC --.....(--(((((((.....((....))..))))))))(((.((....))......((..(((((((....))....)))))..)).((((........)))).-...)))....... ( -34.20) >DroMoj_CAF1 6153 90 - 1 -----------------------------GAGUGGAAGGAGGCAUGGAAGCAAAUCUGGGUGCCCGGCUGGAAGGAGAUUUGGGUGCCUGGCUGGAAGAAAAUCUG-GAAGCCCGUCGUU -----------------------------.....((..(.(((............(..((..((((.((......))...))))..))..)(..((......))..-)..)))).))... ( -24.80) >DroAna_CAF1 5078 104 - 1 --UAU-UACUUCU------------UCAGGAAUGGAAGGAGGCAUGGAAACAGAUCUGGGUGCCCGGCUGGAAGGAGAUCUGGGUGCCUGGCUGGAAGAAGAUCUG-GAAGCCAGUGGUC --...-..(((((------------((.......)))))))...((....))((((.(((..(((((((......))..)))))..)))((((...((.....)).-..))))...)))) ( -35.50) >DroPer_CAF1 5431 103 - 1 --CUU-UU--CUU------------ACAGGAAUGGAAAGAGGCAUGGAAACAGAUUUGGGUCCCUGGCUGGAAAGAGAUCUGGGUGCCUGGGUGGAAGAAGAUCUGGGAAACCAGUGGUC --.((-((--((.------------.((((..............((....)).(((..((((.((........)).))))..))).))))...))))))....((((....))))..... ( -30.10) >consensus __AAU_UU__CUU____________ACAGGAAUGGAAAGAGGCAUGGAAACAGAUUUGGGUGCCCGGCUGGAAAGAGAUCUGGGUGCCUGGAUGGAAGAAGAUCUG_GAAGCCAGUGGUC ........................................(((.((....))...(..((..(((((((....))....)))))..))..)...................)))....... (-20.18 = -19.68 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:27 2006