Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,306,537 – 12,306,631 |
Length | 94 |
Max. P | 0.807052 |
Location | 12,306,537 – 12,306,631 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 93.14 |
Mean single sequence MFE | -16.46 |
Consensus MFE | -14.40 |
Energy contribution | -14.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.38 |
Structure conservation index | 0.87 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.807052 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12306537 94 + 20766785 CAACAACAGACUAAACCGUCAACGCAGGGAAAUUAGAAUCCCAAAUUUGUAAUGGCCCUGUUAUAAAAGUCCAAUUUUAUUUGAAUUUGAAUGU ........(((......)))...((((((..((((.((........)).))))..))))))........((.(((((.....))))).)).... ( -17.30) >DroSec_CAF1 5269 87 + 1 -AACAACAGACUAAACCGACAACGCAGGGAAAUUAGAAUCCCAAAUUUGUAAUGGCCCUGUUAUAAAAGUCCAAUUU------AAUUUGAAUGU -.....((((.((((..(((...((((((..((((.((........)).))))..)))))).......)))...)))------).))))..... ( -17.10) >DroSim_CAF1 3471 88 + 1 CAACAACAGACUAAACCGACAACGCAGGGAAAUUAGAAUCCCAAAUUUGUAAUGGCCCUGUUAUAAAAGUCCAAUUU------AAUUUGAAUGU ......((((.((((..(((...((((((..((((.((........)).))))..)))))).......)))...)))------).))))..... ( -17.10) >DroEre_CAF1 3652 88 + 1 CAACAACAGACUAAACCGACAACGCAGGGGAAUUAGAAUCCCAAAUUUGUAAUGGCCCUGUUUUUAAAGUCCAAUUU------UAUUUGAAUGU ......((((..(((..(((((.((((((..((((.((........)).))))..)))))).))....)))...)))------..))))..... ( -15.10) >DroYak_CAF1 3624 88 + 1 CAACAACAGACUAAACCGACAACGCAGGGAUAUUAGAAUCCCAAAUUUGUAAUGGCCCUGUUUUUAAAGUCCAAUUU------UAUUUGAACGU ......((((..(((..(((((.((((((.(((((.((........)).))))).)))))).))....)))...)))------..))))..... ( -15.70) >consensus CAACAACAGACUAAACCGACAACGCAGGGAAAUUAGAAUCCCAAAUUUGUAAUGGCCCUGUUAUAAAAGUCCAAUUU______AAUUUGAAUGU ........((((.....(....)((((((..((((.((........)).))))..))))))......))))....................... (-14.40 = -14.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:26 2006