Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,356,591 – 2,356,710 |
Length | 119 |
Max. P | 0.622352 |
Location | 2,356,591 – 2,356,710 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.13 |
Mean single sequence MFE | -44.35 |
Consensus MFE | -32.72 |
Energy contribution | -36.16 |
Covariance contribution | 3.44 |
Combinations/Pair | 1.03 |
Mean z-score | -1.77 |
Structure conservation index | 0.74 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.622352 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2356591 119 - 20766785 AAGCGAAGCAGAAAGCCGAGCUGGCUGGGA-AGGGGAAUUAGAUAGAGACGGCAUAAUUAGAGCACGGCCACCACUCGGCGUUGCAAGCCUAAUGAGUUCGGCUCGGCUUUUGGCGCUAC .((((.....((((((((((((((((.(..-(((..(((((.............)))))...(((..(((.......)))..)))...)))..).)).))))))))))))))..)))).. ( -42.12) >DroSec_CAF1 6116 120 - 1 CAGCGAAGCAGAAAGCCGAGCUGGCUGGGAAAGGGGAAUUAGAUGGAGACGGCAUAAUUAGAGCACGGCCAGCACUCGGCGUUGCAAGCCUAAUGAGUUCGGCUCAGCUUUUGGCGCUGC ((((...((((...(((((((((((((.........(((((..((....))...)))))......))))))))..))))).))))..(((...((((.....))))......))))))). ( -48.16) >DroSim_CAF1 6221 120 - 1 CAGCGAAGCAGAAAGCCGAGCUGGCUGGGAAAGGGGAAUUAGAUGGAGACGGCAUAAUUAGAGCACGGCCAGCACUCGGCGUUGCAAGCCUAAUGAGUUCGGCUCGGCUUUUGGCGCUGC (((((.....((((((((((((((((((........(((((..((....))...))))).........)))))(((((((.......)))....)))).)))))))))))))..))))). ( -50.03) >DroEre_CAF1 6500 106 - 1 CA---AA---------G-AGCUGGCUGGGC-GGGGGAAUUAGGUGGAGACGGCAUAAUUAGAGCACGGCCAACUCUCGGCGUUGCAAGCCUAAUGAGUUCGGCUCGGCUUUUGGCGCUGC ..---.(---------(-((.((((((.((-.....((((((.((....)).).)))))...)).)))))).))))((((((((.(((((....(((.....)))))))).)))))))). ( -41.60) >DroYak_CAF1 5894 118 - 1 CAGCAAAGCACAAAACC-AGCUGGCUGGGA-AGGGGAAUUAGGUGGCGACGGCAUAAUUAGAGCACGGCCAGCACUCGGCGUUGCAAGCCUAAUGAGUUCGGCUCGGCUUUUGGCGCUGC ((((...((.((((...-(((((((((((.-......(((((((.((((((((..............))).((.....)))))))..)))))))...)))))).))))))))))))))). ( -39.84) >consensus CAGCGAAGCAGAAAGCCGAGCUGGCUGGGA_AGGGGAAUUAGAUGGAGACGGCAUAAUUAGAGCACGGCCAGCACUCGGCGUUGCAAGCCUAAUGAGUUCGGCUCGGCUUUUGGCGCUGC (((((.....((((((((((((((((.(...(((..(((((..((....))...)))))...(((..(((.......)))..)))...)))..).)).))))))))))))))..))))). (-32.72 = -36.16 + 3.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:42 2006