Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,304,637 – 12,304,757 |
Length | 120 |
Max. P | 0.558296 |
Location | 12,304,637 – 12,304,757 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.22 |
Mean single sequence MFE | -41.91 |
Consensus MFE | -29.80 |
Energy contribution | -30.05 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.19 |
Mean z-score | -1.44 |
Structure conservation index | 0.71 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.558296 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12304637 120 + 20766785 AGAGUCCUUCAAUGUGGAAGUAGUUACUCCGGCCCUUGGAUGCCUAAAUCUCUCGCCGGCCAAAACCAUUGGCUCCAUGCGAAUGGCAAGCGGCACAAAAUUUGUGCCAGGCCAUCGCAA .(((((((((......))))..(((...(((((....((((......))))...)))))....)))....)))))..(((((.((((....((((((.....))))))..))))))))). ( -42.20) >DroVir_CAF1 9579 120 + 1 GGAAUCAUUUAAUGUGGAAUCGAUAACACCAGCGUUGGGCUGCUUGAAUCUAUCGCCCGCCAAGACCAUAGGCUCCAUGCGCAUGGCCAGCGGCACCAAGUUUGUGCCCGGCCAUCGCAA (((..(........(((...(((((.((.((((.....))))..))....)))))....)))........)..))).((((.((((((.(.(((((.......)))))))))))))))). ( -39.59) >DroGri_CAF1 1848 120 + 1 GGAAUCGUUUAAUGUGGAGUCUGUGGCGCCAGCGUUGGGUUGUUUAAGUCUAUCGCCGGCCAAGACAAUUGGCUCCAUGCGCAUGGCCAGUGGCACCAAGUUUGUGCCCGGCCAUCGCAA .............((((((((..((..(((.(((.(((..(.....)..))).))).))).....))...))))))))(((.((((((.(.(((((.......))))))))))))))).. ( -49.40) >DroWil_CAF1 1486 120 + 1 GGAAUCGUUCAAUGUGGAAACUGUGACACCAGCCUUGGGCUGUUUGAAUCUCUCGCCAGCUAAAACAAUUGGAUCUAUGCGCAUGGCCAGUGGCACCAAAUUCGUGCCAGGUCAUCGCAA ......(((((((((.....((((((((.(((((...)))))..))......))).))).....)).)))))))...((((.((((((..((((((.......)))))))))))))))). ( -35.10) >DroMoj_CAF1 1501 120 + 1 GGAAUCAUUCAAUGUGGAAUCGGUGACACCAGCUCUCGGCUGCUUAAAUCUGUCGCCUGCCAAGACCAUCGGCUCCAUGCGCAUGGCCAGUGGGACAAAGUUUGUGCCGGGCCAUCGAAA .............(((((...(((((((.((((.....))))........))))))).(((.........)))))))).((.((((((...((.(((.....))).)).))))))))... ( -38.70) >DroAna_CAF1 1469 120 + 1 GGAGUCCUUCAACGUGGAAACUGUCACGCCGGCCCUGGGCUGUUUGAAUCUCUCGCCCGCCAAAACCAUCGGCUCCAUGCGCCUGGCCAGCGGCACCAAGUUCGUGCCUGGCCAUCGCAA ((((((......(((((......)))))..(((...((((..............))))))).........)))))).((((..((((((..(((((.......))))))))))).)))). ( -46.44) >consensus GGAAUCAUUCAAUGUGGAAUCUGUGACACCAGCCCUGGGCUGCUUAAAUCUCUCGCCCGCCAAAACCAUUGGCUCCAUGCGCAUGGCCAGCGGCACCAAGUUUGUGCCAGGCCAUCGCAA .............(((((...........((((.....))))................(((.........))))))))(((.((((((...(((((.......))))).))))))))).. (-29.80 = -30.05 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:23 2006