Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,300,176 – 12,300,267 |
Length | 91 |
Max. P | 0.769031 |
Location | 12,300,176 – 12,300,267 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 75.61 |
Mean single sequence MFE | -18.70 |
Consensus MFE | -8.62 |
Energy contribution | -8.62 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.92 |
Structure conservation index | 0.46 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.769031 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12300176 91 + 20766785 AAAAUAUGCACA---GAACCCAAAUUCCGUUUUUCAUUUUGUAUACAAAUUCGGAAGAACCGGAAACGGAUGACUAUAUCACUGGCCUGCCAUA ....((((..((---(........(((((((((((..((((....))))....)))))).))))).(((.(((.....))))))..))).)))) ( -18.20) >DroSec_CAF1 12024 71 + 1 AAAAUGUGCACA---AA--------------------UUUGUAUACAAAUGCGGAGCAACCGGAAACGGAUGACUAUAUCACUGGUCUGCCAUA ....((((.(((---..--------------------..))).))))...(((((.((.(((....))).(((.....))).)).))))).... ( -18.60) >DroSim_CAF1 10524 71 + 1 AAAAUGUGCACA---AA--------------------UUUGUAUACAAAUUCGGAGCAACCGGAAACGGAUGACUAUAUCACUGGCCUGCCAUA ...(((.((((.---((--------------------((((....)))))).).((((.(((....))).)).))............)))))). ( -15.90) >DroEre_CAF1 12326 91 + 1 AAAUUAUGCACA---GAACCGAUAUUCCGUUUCGCAUUAUAUAUACAAAUUUGGAACAACCGGAAUCGGAGGCCUAUAUCACUGGCCUGCCAUA .......((...---...(((((..(((((((((.(((.........))).))))))....))))))))(((((.........))))))).... ( -20.40) >DroYak_CAF1 11658 94 + 1 AAAUUAUGCACAGUAGAACUCAUAUUCCGUUUUGCAUUGUAUAUACAAAUUGGAAAGAACCGGAAACGGAUGACCAUAUCACUGGCCUGCCAUA .......((.((((.((..((((.(((((.((((.((.....)).)))).)))))....(((....))))))).....))))))))........ ( -20.40) >consensus AAAAUAUGCACA___GAAC__A_AUUCCGUUU__CAUUUUGUAUACAAAUUCGGAACAACCGGAAACGGAUGACUAUAUCACUGGCCUGCCAUA ...........................................................(((....))).............(((....))).. ( -8.62 = -8.62 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:22 2006