Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,285,943 – 12,286,060 |
Length | 117 |
Max. P | 0.838682 |
Location | 12,285,943 – 12,286,040 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 81.01 |
Mean single sequence MFE | -26.78 |
Consensus MFE | -15.16 |
Energy contribution | -16.36 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.21 |
Mean z-score | -2.23 |
Structure conservation index | 0.57 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.838682 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12285943 97 - 20766785 UCAACAGCUCAAAUAUAGAACCGAGCUGGUGCAAUUGCUCCUAAACAAAGGACUGACCAAA-GCGGCGGCUUUAAU----AAGUCGCCGCAGCUUGCCAACC ....((((((............))))))(.((((..((((((......)))).........-((((((((((....----)))))))))).))))))).... ( -35.20) >DroSec_CAF1 149572 94 - 1 UCACCAGCUUGAAUUUCGAGCCAAGUUGGUGCAGUUGCUCCUAAACAAAGGACUGACCAAA-GCGGCGGCUUUAAU----AAGUC---GCAGCUCGCCAACC ......(((((.....)))))...(((((((..(((..((((......))))..)))...(-((.(((((((....----)))))---)).)))))))))). ( -33.50) >DroSim_CAF1 143314 94 - 1 UCACCAGCUUAAAUCUCGAGCCAAGCUGGUGCAGUUGCUCCUAAACAAAGGACUGACCAAA-GCGGCGGCUUUAAU----AAGUC---GCAGCUCGCCAACC .(((((((((............)))))))))..(((((((((......))))........(-((.(((((((....----)))))---)).))).).)))). ( -31.00) >DroEre_CAF1 155869 94 - 1 UCACCAUCUUCAGAUUCAAGCUAAGCCGGUGCAGUUGCUCCU-AACAAGGGACUGACCAAAACCCGAGUCUUUAAU----AAGUC---GCAGCUCUUCAACC .((((..(((.((.......)))))..)))).((((((..((-....(((((((............)))))))...----.))..---))))))........ ( -17.30) >DroYak_CAF1 151527 98 - 1 UCACUAUCUUCCAUUUCGAGCUCAGCGGGUGCAGUUGCCCUU-AACAAAGGACUGACCACAACCAACGCCUUUAAUACUUAAGUC---GCAGCUUUCCAACC .................(((((..((((((.((((...((((-....)))))))))))...........(((........))).)---)))))))....... ( -16.90) >consensus UCACCAGCUUAAAUUUCGAGCCAAGCUGGUGCAGUUGCUCCUAAACAAAGGACUGACCAAA_GCGGCGGCUUUAAU____AAGUC___GCAGCUCGCCAACC .(((((((((............))))))))).((((((((((......))))...............(((((........)))))...))))))........ (-15.16 = -16.36 + 1.20)
Location | 12,285,965 – 12,286,060 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 73.43 |
Mean single sequence MFE | -29.48 |
Consensus MFE | -14.44 |
Energy contribution | -14.76 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.29 |
Mean z-score | -1.73 |
Structure conservation index | 0.49 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.616281 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12285965 95 - 20766785 ------------CCCCUGGGAGCAUA--------UGGGCUUCAACAGCUCAAAUAUAGAACCGAGCUGGUGCAAUUGCUCCUAAACAAAGGACUGACCAAA-GCGGCGGCUUUAAU--- ------------....((((((((..--------...((.....((((((............))))))..))...))))))))....((((.(((.((...-..)))))))))...--- ( -29.00) >DroSec_CAF1 149591 95 - 1 ------------CCCCUGGGAGCAUA--------UGGGCUUCACCAGCUUGAAUUUCGAGCCAAGUUGGUGCAGUUGCUCCUAAACAAAGGACUGACCAAA-GCGGCGGCUUUAAU--- ------------....((((((((..--------...(((.((((((((((..........)))))))))).)))))))))))....((((.(((.((...-..)))))))))...--- ( -34.20) >DroSim_CAF1 143333 95 - 1 ------------CCCCUGGGAGCAUA--------UGGGCUUCACCAGCUUAAAUCUCGAGCCAAGCUGGUGCAGUUGCUCCUAAACAAAGGACUGACCAAA-GCGGCGGCUUUAAU--- ------------....((((((((..--------...(((.(((((((((............))))))))).)))))))))))....((((.(((.((...-..)))))))))...--- ( -33.10) >DroEre_CAF1 155888 107 - 1 CACAUUCCCCCACCCUUGGGAAUAUA--------CGGGUUUCACCAUCUUCAGAUUCAAGCUAAGCCGGUGCAGUUGCUCCU-AACAAGGGACUGACCAAAACCCGAGUCUUUAAU--- ...((((((........))))))...--------(((((((((((..(((.((.......)))))..))))(((((.((...-....)).)))))....)))))))..........--- ( -27.60) >DroYak_CAF1 151547 118 - 1 CACAUUUCCCAGCCCUUGGGAAUAUAUGUAAGUAUGGGUUUCACUAUCUUCCAUUUCGAGCUCAGCGGGUGCAGUUGCCCUU-AACAAAGGACUGACCACAACCAACGCCUUUAAUACU .(((((((((((...)))))))...)))).(((((((((((................)))))).((((((.((((...((((-....))))))))......)))..))).....))))) ( -23.49) >consensus ____________CCCCUGGGAGCAUA________UGGGCUUCACCAGCUUAAAUUUCGAGCCAAGCUGGUGCAGUUGCUCCUAAACAAAGGACUGACCAAA_GCGGCGGCUUUAAU___ ............((....))...............((((..(((((((((............))))))))).....)))).........((.....))..................... (-14.44 = -14.76 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:16 2006