Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,281,730 – 12,281,850 |
Length | 120 |
Max. P | 0.530776 |
Location | 12,281,730 – 12,281,850 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.08 |
Mean single sequence MFE | -35.33 |
Consensus MFE | -21.07 |
Energy contribution | -22.72 |
Covariance contribution | 1.65 |
Combinations/Pair | 1.27 |
Mean z-score | -1.73 |
Structure conservation index | 0.60 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.530776 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12281730 120 - 20766785 GGAAAGUUGUUGGCCGCAAAACAGCUAACCGUUUUCCAAAAAUUGUCGAAUUCCGCAUCCAACGCGUUUUUCACGGUAAAAACAUCGGAUUUGGUUGUUUUUGUGUCGAUGGCCGGCAUU ((((((..((((((.(.....).))))))..))))))((((((..((((((((.((.......))((((((......))))))...))))))))..))))))((((((.....)))))). ( -32.50) >DroSec_CAF1 145429 120 - 1 GGAAAGUUGUUGGCCGCAAAACAGCUAACCGUUUUCCAAAAAUUGUCAAAUUCCGCGUCCAUCGCGUUUGGCACGAAAAAAACAUCGGAUUUGGUUGUUUUUGUGUCGGUGGACGACAUU .....((((((.(((((((((((((((((((............(((((((...((((.....)))))))))))............)))..))))))))))...)).)))).))))))... ( -38.95) >DroSim_CAF1 139176 120 - 1 GGAAAGCUGUUGGCCGCGAAACAGCUAACCGUUUUCCAAAAAUUGUCAAAUUCCGCGUCCAUCGCGUUUGGCACAAAAAAAACAUCGGAUUUGGUGGUUUUUGUGUCGGUGGCUGACAUU (((((((.((((((.(.....).)))))).)))))))......(((((....(((((.....)))....((((((((((...(((((....))))).))))))))))))....))))).. ( -43.10) >DroEre_CAF1 151727 108 - 1 GGAAAGCUGUUGGCCGCAAAACAGCUAACCGUUUUCCAAAAGUUUUCGAAUUCCGCGUCCAGGGCGUUGGUCACCAAAGGAGCAUCAGAUUUGCUGUUUAUA------------GACAUU (((((((.((((((.(.....).)))))).)))))))....((((..(((((((((((.....))))(((...)))..)))(((.......))).))))..)------------)))... ( -28.70) >DroYak_CAF1 147383 120 - 1 GGAAAAUUGUUGGCCGCAAAACAGCUAACCGUUUUCCAAAAGUUUUCGAAUUCCGCGUCCAUGGCGUUUGGUGGAAAAACAUCAUCGGGCUUCUUGUUUAUUAUGCAGGGUGUCACCAUU (((((((.((((((.(.....).)))))).))))))).........(((.....((((.....)))).(((((......))))))))(((.((((((.......)))))).)))...... ( -33.40) >consensus GGAAAGUUGUUGGCCGCAAAACAGCUAACCGUUUUCCAAAAAUUGUCGAAUUCCGCGUCCAUCGCGUUUGGCACAAAAAAAACAUCGGAUUUGGUGGUUUUUGUGUCGGUGGCCGACAUU (((((((.((((((.(.....).)))))).)))))))((((((..(((((((((((.......)))(((.....))).........))))))))..))))))((((((.....)))))). (-21.07 = -22.72 + 1.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:14 2006