Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,281,111 – 12,281,203 |
Length | 92 |
Max. P | 0.808870 |
Location | 12,281,111 – 12,281,203 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 80.56 |
Mean single sequence MFE | -29.05 |
Consensus MFE | -19.55 |
Energy contribution | -19.47 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.24 |
Mean z-score | -1.87 |
Structure conservation index | 0.67 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.808870 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12281111 92 + 20766785 GGCCACUGUGGCAGAC---------CCCCAAUUUUCC--CCGAUGUUUGAUCUUAUUAUGAGCCAUUUCACAUAUCGCUGCCGGCACAGUGGCUAUAGCGACG ((((((((((((((..---------............--.((((((.(((.(((.....))).....))).)))))))))))...)))))))))......... ( -26.96) >DroSec_CAF1 144836 94 + 1 AGCCACUGUGGCGGCC---------CCCCAAUUUUCCCCCCGAUGUUUGAUCUUAUUAUGAGCCAUUUCAGAUAUCGCUGCCGGCACAGUGGCUAUAGCGACG ((((((((((.((((.---------...............((((((((((.(((.....))).....))))))))))..)))).))))))))))......... ( -35.87) >DroSim_CAF1 138575 97 + 1 AGCCACUGUGGCGCCCGC-----UUCCCCAAUUUUCC-CCCGAUGUUUGAUCUUAUUAUGAGCCAUUUCAGAUAUCGCUGCCGGCACAGUGGCUAUAGCGACG ((((((((((.((...((-----..............-..((((((((((.(((.....))).....))))))))))..)))).))))))))))......... ( -30.07) >DroEre_CAF1 151175 89 + 1 AGCCACUGUGGCGG---------CCCCCC-AUUUUA---CCAAUGUCUGAUCUUAUUAUGAGCCAUUUGAC-UAUCGCUGCCGGCACAGUGGCUAUAGCGACG ((((((((((.(((---------(....(-(((...---..))))...............(((.((.....-.)).))))))).))))))))))......... ( -30.20) >DroYak_CAF1 146762 93 + 1 AGCCACUGUGGCGCCUGC-----CCCCCC-AUUUUC---CCAAUGUUUGAUCUUAUUAUGAGCCAUUUCAC-UAUCGCUGCCGGCACAGUGGCUAUAGCGACG ((((((((((.((.(.((-----.....(-(((...---..)))).............((((....)))).-....)).).)).))))))))))......... ( -24.90) >DroAna_CAF1 137962 91 + 1 -GUUGCUGUUGCCACCCCAGAGGAGCCCCCGCCUUCC--UGGAUGUUUGAUCUUAUUAUGAGCUAUUUCAC-UAUCGCUGCCGGCACAGUGGCUC-------- -((..((((.(((...(((((((.((....))))).)--)))..................(((.((.....-.)).)))...)))))))..))..-------- ( -26.30) >consensus AGCCACUGUGGCGGCC_________CCCCAAUUUUCC__CCGAUGUUUGAUCUUAUUAUGAGCCAUUUCAC_UAUCGCUGCCGGCACAGUGGCUAUAGCGACG ((((((((((.((............................((((........))))...(((.((.......)).)))..)).))))))))))......... (-19.55 = -19.47 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:13 2006