Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,277,816 – 12,277,907 |
Length | 91 |
Max. P | 0.869841 |
Location | 12,277,816 – 12,277,907 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 71.41 |
Mean single sequence MFE | -12.32 |
Consensus MFE | -9.11 |
Energy contribution | -9.08 |
Covariance contribution | -0.03 |
Combinations/Pair | 1.20 |
Mean z-score | -1.00 |
Structure conservation index | 0.74 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.869841 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12277816 91 - 20766785 UUUAUUUCGAGUCCAAG------AAAAAAUUUUACUUA-AAUUUAUAUUCGCAUCACAGCACCACGAUGCCGAUUUCUCCACACAAUCGAUGGUGUAC ....((((........)------)))((((((.....)-)))))..............((((((((((.................)))).)))))).. ( -13.13) >DroGri_CAF1 174842 91 - 1 GAACCC-CAAA--C--AAAAGAUAAAAACUCAAUAAUAAACUCUAAU--CCAUUGACAGCCCCGCGAUUCGGACUUCUCCACACAAUCGAUGGUCUAC ......-....--.--...............................--(((((((..((...)).....(((....)))......)))))))..... ( -9.90) >DroSec_CAF1 141587 91 - 1 UUUAUUUCAAAUCCAAU------AAAAAACUAUACUUA-AAUUCAUUUUCGUAUCGCAGCACCACGAUGCCGAUUUCUCCACACAAUCGAUGGUGUAC .................------...............-...................((((((((((.................)))).)))))).. ( -11.33) >DroSim_CAF1 135295 91 - 1 UAAAUUUAAAAUUCAUG------AAAAAUAUAUACUUA-AAUUCAUUUUCGUAUUGCAGCACCACGAUGCCGAUUUCUCCACACAAUCGAUGGUGUAC ..............(((------((((...........-......)))))))......((((((((((.................)))).)))))).. ( -12.96) >DroEre_CAF1 147886 90 - 1 UGCACUUAAAUUCCACG------AAAU-CUGUUACCCA-AAUUCGUAUUUGUCUCACAGCAUCACGAUGCCGAUUUCUCCACACAAUCGAUGGUGUAC (((((...........(------((((-((((.(..((-(((....)))))..).)))((((....)))).))))))......((.....))))))). ( -14.90) >DroYak_CAF1 143443 90 - 1 CUCAUUAAAAUUUCAUA------AUAA-AUUAUUCCCU-AAUUCAUAUUGGUAUCAUAGCAUCACGAUGCCGAUUUCUCCACACAAUCGAUGGUGUAC .................------....-..........-.......(((((((((..........)))))))))......((((........)))).. ( -11.70) >consensus UUAAUUUAAAAUCCAAG______AAAAAAUUAUACUUA_AAUUCAUAUUCGUAUCACAGCACCACGAUGCCGAUUUCUCCACACAAUCGAUGGUGUAC ..........................................................((((((((((.................)))).)))))).. ( -9.11 = -9.08 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:12 2006