Locus 370

Sequence ID 2R_DroMel_CAF1
Location 2,355,932 – 2,356,051
Length 119
Max. P 0.844579
window729

overview

Window 9

Location 2,355,932 – 2,356,051
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.24
Mean single sequence MFE -44.18
Consensus MFE -36.66
Energy contribution -37.14
Covariance contribution 0.48
Combinations/Pair 1.06
Mean z-score -1.76
Structure conservation index 0.83
SVM decision value 0.76
SVM RNA-class probability 0.844579
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2355932 119 + 20766785
CUUCAAUAUCCUGCAGACUAGCCGGACUGCAGGAAGCACUUUGUGGACGGGCAGAAUACCCCACGGAGCGCCAAAUGGCGGCCAGUCACGGAUU-UGGUCCUCCCAGCCCAGAUCCUUCC
........((((((((.((....)).)))))))).((.((((((((..((........))))))))))((((....)))))).......(((((-(((.(......).)))))))).... ( -44.30)
>DroSec_CAF1 5507 119 + 1
CUUCAAUAUCCUGCAGACUAGCCGGACUGCAGGAAGCACUUUGUGGACGGGCAGAAUGCACCACGGAGCGCCAAAUGGCGUACAGUCACGGAUU-UGGUCCUCCCAGCCCAGAUCCUUCC
........((((((((.((....)).)))))))).((.((((((((....((.....)).)))))))).))....((((.....)))).(((((-(((.(......).)))))))).... ( -43.00)
>DroSim_CAF1 5593 119 + 1
CUUCAAUAUCCUGCAGACUAGCCGGACUGCAGGAAGCACUUUGUGGACGGGCAGAAUGCCCCACGGAGCGCCAAAUGGCGGCCAGUCACGGAUU-UGGUCCUCCCAGCCCAGAUCCUUCC
........((((((((.((....)).)))))))).((.((((((((...(((.....)))))))))))((((....)))))).......(((((-(((.(......).)))))))).... ( -46.70)
>DroEre_CAF1 5395 120 + 1
CUUCAAUAUCCUGCAGACUAGCCGGACUGCAGGAAGCACUUUGUGGACGGGCAGAAUGCCCCACGGAGCGCCAAAUGGCGGCCAGUCACGGAUUCUGGUCCUCCCAGCUCAGAUCCUUCC
........((((((((.((....)).)))))))).((.((((((((...(((.....)))))))))))((((....)))))).......(((((((((.....))))....))))).... ( -44.30)
>DroYak_CAF1 5342 120 + 1
CUUCAAUAUCCUGCAGACUAGCCGGACUGCAGGAAGCACUUUGUGGACGGGCGGAAUACCCCAUGGAGUGCCAAAUGGCGGCCAGUCACGGAUUUUGGUCCUCCCAGCCCAGUUCCUUCC
........((((((((.((....)).))))))))..........((((((((((......))..((((..(((((((((.....)))).....)))))..))))..)))).))))..... ( -42.60)
>consensus
CUUCAAUAUCCUGCAGACUAGCCGGACUGCAGGAAGCACUUUGUGGACGGGCAGAAUGCCCCACGGAGCGCCAAAUGGCGGCCAGUCACGGAUU_UGGUCCUCCCAGCCCAGAUCCUUCC
........((((((((.((....)).)))))))).((.((((((((...(((.....))))))))))).))....((((.....)))).(((((..(((.......)))..))))).... (-36.66 = -37.14 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:41 2006