Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,276,492 – 12,276,598 |
Length | 106 |
Max. P | 0.551259 |
Location | 12,276,492 – 12,276,598 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 79.92 |
Mean single sequence MFE | -23.60 |
Consensus MFE | -14.68 |
Energy contribution | -17.10 |
Covariance contribution | 2.42 |
Combinations/Pair | 1.15 |
Mean z-score | -1.48 |
Structure conservation index | 0.62 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.551259 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12276492 106 + 20766785 AACCAGAUCUAGACUAGGUAAGACUACUUCCAACUUACCUUCCUGCACUUCAAUGCCCUCGGCUUUGAGUAAGUCCCGCAGCUUCUGGAUCUCCUCCUUGAGUUCG ....(((((((((..(((((((...........)))))))..(((((((((((.(((...))).))))...)))...))))..))))))))).............. ( -27.30) >DroVir_CAF1 168623 94 + 1 AACUCC-----------AUAAAUUGAGCU-GCACUUACCCUCCUGCACCUCAAUGCCCUCGGCCUUGAGCAGAUCGCGCAGUUUUUGUAUCUCCUCUUUGAGCUCG ......-----------.......(((((-.((..(((....((((...((((.(((...))).))))((.....)))))).....))).........))))))). ( -18.60) >DroSim_CAF1 133976 106 + 1 AACCAGAUCUAGACUAGGUAAGACUACUUCCAACUUACCUUCCUGCACUUCAAUGCCCUCGGCUUUGAGUAAAUCCCGCAGCUUCUGGAUCUCCUCCUUGAGUUCG ....(((((((((..(((((((...........)))))))..(((((((.(((.(((...))).)))))).......))))..))))))))).............. ( -26.31) >DroEre_CAF1 146558 106 + 1 AACCAGAUCUAGACUAGGUAAGACUACUUCCAACUUACCUUCCUGCACUUCAAUGCCCUCGGCUUUGAGUAAGUCCCGCAGCUUCUGGAUCUCCUCCUUAAGUUCG ....(((((((((..(((((((...........)))))))..(((((((((((.(((...))).))))...)))...))))..))))))))).............. ( -27.30) >DroYak_CAF1 142125 106 + 1 AACCAGAACUAGACUAGGUAAGACUAUUUCCAACUCACCUUCCUGCACUUCAAUGCCCUCGGCUUUGAGUAAGUCCCGCAGCUUCUGGAUCUCCUCCUUGAGUUCG ..((((((.......((((.((...........)).))))..(((((((((((.(((...))).))))...)))...)))).))))))..(((......))).... ( -20.80) >DroPer_CAF1 146836 97 + 1 AA--AGUUAAGGAUCUGCUGAGAAUG-------CUUACCUUCCUGCACUUCGAUGCCUUCGGCCUUCAGAAGAUCGCGCAGCUUCUGUAUCUCCUCCUUAAGUUCG .(--(.((((((((((.(((((((((-------(..........))).)))...(((...)))..)))).)))))..((((...))))........))))).)).. ( -21.30) >consensus AACCAGAUCUAGACUAGGUAAGACUACUUCCAACUUACCUUCCUGCACUUCAAUGCCCUCGGCUUUGAGUAAAUCCCGCAGCUUCUGGAUCUCCUCCUUGAGUUCG ....(((((((((...((((((...........))))))...((((...((((.(((...))).))))(.......)))))..))))))))).............. (-14.68 = -17.10 + 2.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:11 2006