Locus 3696

Sequence ID 2R_DroMel_CAF1
Location 12,272,729 – 12,272,836
Length 107
Max. P 0.617439
window6008

overview

Window 8

Location 12,272,729 – 12,272,836
Length 107
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 76.37
Mean single sequence MFE -24.33
Consensus MFE -16.38
Energy contribution -16.02
Covariance contribution -0.36
Combinations/Pair 1.24
Mean z-score -1.14
Structure conservation index 0.67
SVM decision value 0.17
SVM RNA-class probability 0.617439
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12272729 107 - 20766785
---AUAUCACUAGAGAUAUAACUAAAAUUUCAUAUUCAUUA-UUUGUAAAAGAACUUGAGGAUGUGGACUCUGGUCGUGGCAUUGACUCUAACUCCGCAUCCGAGUGCCAC
---(((((......))))).(((......(((..(((....-.........)))..)))(((((((((....(((((......))))).....))))))))).)))..... ( -24.52)
>DroSec_CAF1 136498 108 - 1
U--AUAUCACUAGUGUUAUCACUAAAAGUUCAUAUUCAUUA-UUUUUAAAAGAACUUGAGGAUGUGGACUCUGGUCGUGGCAUUGACUCUAACUCCGCAUCCGAGUGCCAC
.--....((((((((....))))..((((((..........-.........))))))..(((((((((....(((((......))))).....))))))))).)))).... ( -28.41)
>DroSim_CAF1 130234 108 - 1
U--AUAUCACUAGUGUUAUCACUAAAAGUUCAUAUUCAAUA-UUUCUAAAAGAACUUGAGGAUGUGGACUCUGGUCGUGGCAUUGACUCUAACUCCGCAUCCGAGUGCCAC
.--....((((((((....))))..((((((..........-.........))))))..(((((((((....(((((......))))).....))))))))).)))).... ( -28.41)
>DroEre_CAF1 142793 103 - 1
CAUA----ACU---AGUAUCACUACAAGUUUUUCUUUUUUA-UUUGUAAUAGAACUUGAGGAUGUGGAUUCUGGUCGUGGCAUCGACUCCAACUCCGCCUCUGAGUGCCAU
....----...---.....((((.((((((((.........-........)))))))).(((.(((((((..(((((......)))))..)).))))).))).)))).... ( -22.73)
>DroYak_CAF1 138384 104 - 1
CUUAUAACACUAGUACUAUCACUACAU------AUUCAUUA-UUUGUAACAGAACUGGAGGAUGUGGAUUCUGGUCGUGGCAUUGACUCAAACUCCGCUUCCGAGUGCCAU
............(((((.....((((.------((.....)-).))))...........(((.(((((((..(((((......)))))..)).))))).))).)))))... ( -21.70)
>DroAna_CAF1 129134 97 - 1
CUUU----AAA---AAUGUGAUUCCAACU-------CUUAACCCCAUAGCGGAACUCGAGGACGUGGAUUCUGGUCGUGGCAUUGACUCCAACUCUGCUUCCGAGUGCCAU
....----...---...............-------..............((.(((((.(((.(..((((..(((((......)))))..)).))..))))))))).)).. ( -20.20)
>consensus
C__AUAUCACUAGUAAUAUCACUAAAAGUUCAUAUUCAUUA_UUUGUAAAAGAACUUGAGGAUGUGGACUCUGGUCGUGGCAUUGACUCUAACUCCGCAUCCGAGUGCCAC
.....................................................((((..(((.(((((....(((((......))))).....))))).)))))))..... (-16.38 = -16.02 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:07 2006