Locus 3695

Sequence ID 2R_DroMel_CAF1
Location 12,270,873 – 12,270,967
Length 94
Max. P 0.592057
window6007

overview

Window 7

Location 12,270,873 – 12,270,967
Length 94
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 78.69
Mean single sequence MFE -24.83
Consensus MFE -19.72
Energy contribution -19.12
Covariance contribution -0.61
Combinations/Pair 1.35
Mean z-score -0.96
Structure conservation index 0.79
SVM decision value 0.12
SVM RNA-class probability 0.592057
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12270873 94 - 20766785
CCAACGGGAGCAGGAUCUCAUGCUUAAAUGCUUAAAGUUGGUGCAGGGUAAGUUAAUACUGAGACUUAUCAAGCGUUCCAGUCACUC-------UCUUCUA
(((((..(((((.((.(....).))...)))))...))))).((..((((((((........))))))))..)).............-------....... ( -22.30)
>DroSec_CAF1 134642 94 - 1
CCAACGAGAGCAGGAUCUCAUGCUUAAAUGCUUAAAGUUGGUGCAGGGUGAGUUAAAGCUGAGACUUACCAAGCGUUCCAGUCACUC-------AAUUCUA
(((((((((......))))..((......)).....))))).((..((((((((........))))))))..)).............-------....... ( -25.30)
>DroSim_CAF1 128379 94 - 1
CCAACGAGAGCAGGAUCUCAUGCUUAAGUGCUUAAAGUUGGUGCAGGGUGAGUUAAAACUGAGACUUACCAAGCGUUCCAGUCACUC-------AAUUCUA
(((((((((......))))..((......)).....))))).((..((((((((........))))))))..)).............-------....... ( -25.30)
>DroEre_CAF1 140919 101 - 1
CCAACGGGAGCAGGAUCUCAUGCUCAAAUGCUUAAAGUUGGUGCAGGGUGAGUUGAAGCUGAGCUUUACCAAGCGUCCUAGUCGCUCUAAUAUGUAUUCUC
(((((..(((((.((.(....).))...)))))...)))))...(((((((.(.((.(((...........))).))..).)))))))............. ( -26.10)
>DroYak_CAF1 136515 94 - 1
CCAACGGGAGCAGGAUCUCAUGCUCAAGUGCUUAAAGUUGGUGCAGGGUAAAUUGAAACUCUGAUUUACUAAGCCUCCCAUUUGCUU-------AAUUCUA
.....(((((((........))))).((.((((..(((..((.((((((........))))))))..))))))))).))........-------....... ( -21.90)
>DroPer_CAF1 140897 87 - 1
CCAACGGGAGCAGGAUCUCAUGCUCAAGUGUUUGAAGCUUGUGCAAGGUGAGUCG-------GUCUUAUAUGGCUUUCCAUCAUCCC-------UUGGCUA
((((.((((....(((....(((.(((((.......))))).))).((.((((((-------........)))))).))))).))))-------))))... ( -28.10)
>consensus
CCAACGGGAGCAGGAUCUCAUGCUCAAAUGCUUAAAGUUGGUGCAGGGUGAGUUAAAACUGAGACUUACCAAGCGUUCCAGUCACUC_______AAUUCUA
(((((..(((((.((.(....).))...)))))...))))).((..((((((((........))))))))..))........................... (-19.72 = -19.12 +  -0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:06 2006