Locus 3692

Sequence ID 2R_DroMel_CAF1
Location 12,248,392 – 12,248,482
Length 90
Max. P 0.544116
window6000

overview

Window 0

Location 12,248,392 – 12,248,482
Length 90
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 92.41
Mean single sequence MFE -23.93
Consensus MFE -18.24
Energy contribution -18.88
Covariance contribution 0.64
Combinations/Pair 1.04
Mean z-score -1.61
Structure conservation index 0.76
SVM decision value 0.02
SVM RNA-class probability 0.544116
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12248392 90 - 20766785
UGGGAGAGCUGCUUUGAUUGCAAUCGCGAUCGUUAAUUAAAUGUCGAAAGGAAUGUUGUUGUU---GCAGCU-----UGUGUUUGUGUUGCAGAUGU-U---
.....(((((((...((((((....))))))..((((...((..(....)..))...))))..---))))))-----)(..((((.....))))..)-.--- ( -23.80)
>DroSec_CAF1 112557 90 - 1
UGGGAGAGCUGCUUUGAUUGCAAUCGCGAUCGUUAAUUAAAUGUCGAAAGGAAUGUUGUUGUU---GCAGCU-----UGUGUUUGUGUUGCAGAUGU-U---
.....(((((((...((((((....))))))..((((...((..(....)..))...))))..---))))))-----)(..((((.....))))..)-.--- ( -23.80)
>DroSim_CAF1 106135 90 - 1
UGGGAGAGCUGCUUUGAUUGCAAUCGCGAUCGUUAAUUAAAUGUCGAAAGGAAUGUUGUUGUU---GCAGCU-----UGUGUUUGUGUUGCAGAUGU-U---
.....(((((((...((((((....))))))..((((...((..(....)..))...))))..---))))))-----)(..((((.....))))..)-.--- ( -23.80)
>DroYak_CAF1 112581 99 - 1
UGGGAUGGCGGCUUUGAUUGCAAUCGCGAUCGUUAAUUAAAUGUCGAAAGGAAUGUUGUUGUUGGUGCAGCUUGUCUUGUGUUUGUGUUGCAGAUGUUU---
...((..(((((...((((((....))))))............((....))...)))))..))..((((((...............)))))).......--- ( -22.96)
>DroAna_CAF1 99705 93 - 1
UGGGAGAACUGCUUUGAUUGCAAUCGCGAUCGUUAAUUAAAUGUCGAAAGGAAUGUUGUUGUU---GCAUCU-----UGUGUUUGUGUUGCAGUUGU-UCCU
.((((.((((((...((((((....))))))........((..(.((.((((.(((.......---))))))-----)...)).)..)))))))).)-))). ( -25.30)
>consensus
UGGGAGAGCUGCUUUGAUUGCAAUCGCGAUCGUUAAUUAAAUGUCGAAAGGAAUGUUGUUGUU___GCAGCU_____UGUGUUUGUGUUGCAGAUGU_U___
......((((((...((((((....))))))..((((...((..(....)..))...)))).....))))))........(((((.....)))))....... (-18.24 = -18.88 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:00 2006