| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,246,561 – 12,246,651 |
| Length | 90 |
| Max. P | 0.607796 |
| Location | 12,246,561 – 12,246,651 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 88.85 |
| Mean single sequence MFE | -32.57 |
| Consensus MFE | -24.82 |
| Energy contribution | -25.60 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.607796 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12246561 90 + 20766785 GGG---GAGGAGACUGACGGAGACUGUCAUGUCGCAAAAGACGGGAUAAGAGUUUCCCAGAAGGUCCUCGCUUUUCAUCCAUGGAAUGGCUGA ((.---(((((((((((((....).)))).))).........((((........))))......))))).))..(((.((((...)))).))) ( -29.30) >DroSec_CAF1 110746 92 + 1 GGGGUGGAGGAGACUGACGGAGACUGUCAUGUCGCAA-AGACGGGAUAAGAUUUUCCCGGAAGGUCCUCACUCUUCAUCCUGGGAAUGCCCAA ((((((((((.((((((((....).)))).)))....-...(((((........)))))............))))))))))(((....))).. ( -35.40) >DroSim_CAF1 104342 92 + 1 UGGGAGGAGGAGACUGACGGAGACUGUCAUGUCGCAA-AGACAGGAUAAGAUUUUCCCGGAAGGUCCUCACUCUUCAUCCUGGGAAUGCCCAA .((((.((((((..(((.(((...((((.((((....-.)))).))))........((....)))))))))))))).))))(((....))).. ( -33.00) >consensus GGGG_GGAGGAGACUGACGGAGACUGUCAUGUCGCAA_AGACGGGAUAAGAUUUUCCCGGAAGGUCCUCACUCUUCAUCCUGGGAAUGCCCAA .(((..(((((((((((((....).)))).)))........(((((........))))).....)))))........((....))...))).. (-24.82 = -25.60 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:59 2006