Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,243,915 – 12,244,021 |
Length | 106 |
Max. P | 0.668954 |
Location | 12,243,915 – 12,244,021 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 76.94 |
Mean single sequence MFE | -18.01 |
Consensus MFE | -2.88 |
Energy contribution | -4.80 |
Covariance contribution | 1.92 |
Combinations/Pair | 1.12 |
Mean z-score | -1.66 |
Structure conservation index | 0.16 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.668954 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12243915 106 - 20766785 AAACUUUUUCAGACUACCAUAAAUGGCAGUGCGUAUUUUUUUCUGCAUCAUUUGGAAGUUCGUUUCAUUUUUAUUUCCCAGUAAUCAUUUCCUAAAUGUAGCCAUU .....................((((((.(((((.(......).)))))(((((((((((..(((..................))).)))))).)))))..)))))) ( -15.27) >DroSec_CAF1 108212 85 - 1 UAACUUUAUCAG-----------------UGUG---GUUUUUCUGCUUAAUUUGGAAUUUCGUUACAUUUUUAUUUC-CAGUAAUCAUUUCCUAAAUGUAGCCAUU ............-----------------.(((---(.....((((.......((((....(((((...........-..)))))...)))).....)))))))). ( -9.62) >DroSim_CAF1 101754 85 - 1 UAACUUUUUCAG-----------------UGUG---UUUUUUCUGCUUAAUUUGAAAGUUCGUUACAUUUUUAUUUC-CAGUAAUCAUUUACUAAAUGUAGCCAUU .(((((((....-----------------((.(---(.......)).))....))))))).(((((((((.......-.(((((....)))))))))))))).... ( -12.50) >DroEre_CAF1 112868 102 - 1 AAACUUUUUGUGGCUACAAUGAAUGGCAGUGCG---UCUUUACUGCAUAAUUUGGAAGUUCAUCACAUUUUUAUUCC-CAGUAAUAAGUUCCUAAAUGUAGCCAUU .........(((((((((..((((.((((((..---....))))))...))))((((.((.((.((...........-..)).)))).))))....))))))))). ( -24.72) >DroYak_CAF1 108030 102 - 1 AAACUUUUUGUGGCUGCAAUAAAUGGCAGUGUG---UUUUUACUGCACAAUUUGGAAGUUCGUCACAUUUUUAUUUC-CAGCAAUCAUAUUCCAAAUGUAGCCAUU .........(((((((((.....((((((((..---....)))))).))..((((((((.............)))))-)))...............))))))))). ( -27.92) >consensus AAACUUUUUCAG_CU_C_AU_AAUGGCAGUGUG___UUUUUUCUGCAUAAUUUGGAAGUUCGUUACAUUUUUAUUUC_CAGUAAUCAUUUCCUAAAUGUAGCCAUU ..........................................((((((.....((((((..(((((..............))))).))))))...))))))..... ( -2.88 = -4.80 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:58 2006