Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,355,265 – 2,355,379 |
Length | 114 |
Max. P | 0.991511 |
Location | 2,355,265 – 2,355,379 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.21 |
Mean single sequence MFE | -36.72 |
Consensus MFE | -31.96 |
Energy contribution | -31.56 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.12 |
Mean z-score | -1.98 |
Structure conservation index | 0.87 |
SVM decision value | 2.27 |
SVM RNA-class probability | 0.991511 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2355265 114 - 20766785 UGAACCCUUUCAUAAAGGACAGACCGAGCAGCAAAGGGCUUAAUGUGUGUAUUCGCUAAAAGCCUGUUAC------UGUUACUACUGCUGUUCAUGGCAACCAUGAGCUCCAUGGAUUGG ....((..(((((...((((((....(((((.((.((((((...(((......)))...)))))).)).)------))))....)))..((((((((...))))))))))))))))..)) ( -34.30) >DroSec_CAF1 4867 114 - 1 UGUACCCUUUCAUAAAGGACAGACCGAGCAGCAAAGGGCUUAAUGUGUGUAUUCGCUAAAAGCCUGUUAC------UGUUGCUACUGCUGUUCAUGGCAACCAUGUGCUCCAUGGAUUGG ....((..(((((...((((((....(((((((..((((((...(((......)))...)))))).....------)))))))....))))))..((((......))))..)))))..)) ( -35.90) >DroSim_CAF1 4930 114 - 1 UGAACCCUUUCAUAAAGGACAGACCGAGCAGCAAAGGGCUUAAUGUGUGUAUUCGCUAAAAGCCUGUUAC------UGUUGCUACUGCUGUUCAUGGCAACCAUGAGCUCCAUGGAUUGG ....((..(((((...((((((....(((((((..((((((...(((......)))...)))))).....------))))))).)))..((((((((...))))))))))))))))..)) ( -36.70) >DroEre_CAF1 4742 114 - 1 CGAACCCUUUCAUAAAGGACAGACCGAGCGGCAAAGGGCUUAAUGUGUGUAUUCACUAAAAGCCUGUUAC------UGUUGCUGCUGCUGUUCAUGGCAACCAUGAGCUCGAUGGGUUGG (.(((((..((.....((.....)).((((((((.((((((...(((......)))...)))))).....------..))))))))...((((((((...))))))))..)).))))).) ( -40.10) >DroYak_CAF1 4700 119 - 1 UGAACCCUUUCAUAAAGGACAGACCGAGCAGCAAAGGGC-UAAUGUGUGUAUUCACUAAAAGCCUGUUACUGUUACUGUUGCUACUGCUGUUCAUGGCAACCAUUCGCCCCAUGGGUUGG ..(((((.........((((((....(((((((..((((-(...(((......)))....)))))((.......)))))))))....))))))..(((........)))....))))).. ( -36.60) >consensus UGAACCCUUUCAUAAAGGACAGACCGAGCAGCAAAGGGCUUAAUGUGUGUAUUCGCUAAAAGCCUGUUAC______UGUUGCUACUGCUGUUCAUGGCAACCAUGAGCUCCAUGGAUUGG ....((..(((((...((((((....(((((((..((((((...(((......)))...))))))...........)))))))....))))))..(((........)))..)))))..)) (-31.96 = -31.56 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:40 2006