Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,243,459 – 12,243,549 |
Length | 90 |
Max. P | 0.690088 |
Location | 12,243,459 – 12,243,549 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 83.32 |
Mean single sequence MFE | -19.50 |
Consensus MFE | -13.80 |
Energy contribution | -13.97 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -2.16 |
Structure conservation index | 0.71 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.690088 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12243459 90 + 20766785 UUUAUCGAAAUUAGCAUAAAUGGCAAGCGCUUCAACUUUUGCCGCCUGAUCGCCACCACAGGUGGCCGCCUAUAUCUUUAGUC-CUACCUU ......((.((..((......((((((.(......).))))))........((((((...)))))).))..)).)).......-....... ( -19.30) >DroSec_CAF1 107782 90 + 1 UUCAUCGAAAUUAACAUAAAUGGCAAGAGCUUCAACUUUUGCCGCCUGAUCACCACCACAGGUGGCCGCCUAUAUCUUUGGUC-AUACCUU .....................((((((((......)))))((((((((..........)))))))).))).........((..-...)).. ( -20.70) >DroSim_CAF1 101299 90 + 1 UUCAUCGAAAUUAACAUAAAUGGCAAGCGCUUCAACUUUUGCCGCCUGAUCAACACCACAGGUGGCCGCCUAUAUCUUUGGUC-AUACCUU .....................((((((........)))..((((((((..........)))))))).))).........((..-...)).. ( -18.00) >DroEre_CAF1 112415 84 + 1 UUCAUCGAAAUUAACAUAAAUGGCAACAGCUUCAACUUCUGCCGCCUGA------CCACAGGUGGCCUGCCAUAUCUUUGACC-CUACCUU ...................((((((..((......))...((((((((.------...)))))))).))))))..........-....... ( -20.40) >DroYak_CAF1 107562 84 + 1 UUCAUCGAAAUUAACAUAAAUGGCAACAGCUUCAACUUCUGCCGCCUGA------CCACAGGUGGCCUCCUAUAUCUUUACCC-CUACCUU ....................((....))............((((((((.------...)))))))).................-....... ( -16.40) >DroAna_CAF1 95368 85 + 1 UUUAUUGAAAUUAACAUAAAUGGCAACUGCUUUAACUUUUACCGCCUGA------CCACAGGUGGCCUGUUGGCCUCUUGGCCAGAACCCU .....................(((....)))..........(((((((.------...)))))))....((((((....))))))...... ( -22.20) >consensus UUCAUCGAAAUUAACAUAAAUGGCAACAGCUUCAACUUUUGCCGCCUGA______CCACAGGUGGCCGCCUAUAUCUUUGGCC_CUACCUU .....................(((....))).........((((((((..........))))))))......................... (-13.80 = -13.97 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:57 2006