| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,242,288 – 12,242,379 |
| Length | 91 |
| Max. P | 0.715727 |
| Location | 12,242,288 – 12,242,379 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 71.68 |
| Mean single sequence MFE | -24.77 |
| Consensus MFE | -9.73 |
| Energy contribution | -10.06 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.39 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.715727 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12242288 91 + 20766785 CUUUCAAGAGUUGCGCUGCGAACAAU-AAAGGAGCCAAAAAGGCAU---------GAGCAGCUGAAA-----GG--AGUUGCCAA-AAUGUACCAGCAACUUUGAGUUG---------- ..((((.(((((((..((((......-......(((.....))).(---------(.((((((....-----..--)))))))).-..))))...)))))))))))...---------- ( -25.90) >DroSec_CAF1 103142 88 + 1 CUUUCAAGAGGAGCGCUGCGCACAAU-AAAGGAGCCAAAAAGGCAU---------GAGCAGCUGAAA-----GC--AGUUGCCAA-AAUGUUCUACCAACAUUGAG------------- ...((((..((.(((...))).....-..(((((((.....))).(---------(.(((((((...-----.)--)))))))).-....)))).))....)))).------------- ( -22.10) >DroSim_CAF1 100101 95 + 1 CUUUCAAGAGGAGCGCUGCGCACAAU-AAAGGAGCCAAAAAGGCAU---------GAGCAGCUGAAA-----GC--AGUUGCCAA-AAUGUUCUACCAACAUUGAGAUGG------AGU .((((((..((.(((...))).....-..(((((((.....))).(---------(.(((((((...-----.)--)))))))).-....)))).))....))))))...------... ( -23.70) >DroEre_CAF1 111186 108 + 1 CUUUCAUGGGG--AGCUGCGAACAAU-AAAGGAGCCAAAAAGGCAAAGCAGCUGAAAGCAGCUGAAA-----GC--AGUUGCCAA-AAUGUUCCACCAACUUUGAGGUACUCUCACACU ......(((((--((((((...(...-...)..(((.....)))...))))).....(((((((...-----.)--))))))...-.....))).)))....((((.....)))).... ( -31.10) >DroYak_CAF1 106311 97 + 1 CUUUCAUGGAU--UGCUGCGAACAAU-AAAGGAGCCAAAAAGGCAA---------AAGCAGCUGAAA-----GC--AGUUGCCAA-AAUGUUCCAACAACUUUGAGUUACU--CACACU ..((((.((.(--((.((.(((((..-......(((.....)))..---------..(((((((...-----.)--))))))...-..))))))).))))).)))).....--...... ( -25.30) >DroAna_CAF1 94330 91 + 1 CUCAC--------UCCUGCCAACAAUGAAAAGAGCCAAAAAGGCAA----------CGAAGCUGAGGCGGAGGCCUGCUUGCCAAAAAUGUUCCAGCCAAGCCAAGCCA---------- .....--------..(((((.....(....)..(((.....)))..----------.........))))).(((..(((((.(............).)))))...))).---------- ( -20.50) >consensus CUUUCAAGAGG__CGCUGCGAACAAU_AAAGGAGCCAAAAAGGCAA_________GAGCAGCUGAAA_____GC__AGUUGCCAA_AAUGUUCCACCAACUUUGAGUUA__________ ..............(((((..............(((.....))).............)))))......................................................... ( -9.73 = -10.06 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:56 2006